G49508


Basic Information

Item Value
gene id G49508
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13445139 ~ 13446735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66127
gcacagtcatgtttttttatggtTAGGAGTTACAAAGTTTAGAGATGCAAATGATGAGAATACAAGCATGAGTTACTGATATAAATGTACAAAATAGAGTGacattttttaactgttttctttttttaataacatgTATTTGGATGCCAATATGACACTTAACATTATACATCATTGTTTTATTTAGGCCATTTCCTGTGTGTtctcctgtgtttgttttttttgcgtttATCTTGTAATATCAACATCTCTATCATTTTCAGATATTTTGTGGTAGATGTTTAATCAAACTTACAGTCTAGATCTAGCTAAGAAATTCTGCAGCAAATTATAGCTTCACAAAATAAACATCCAAATCAGGCAGCAAATATTTCCCTACAGCTAAGAACAGTCTTTAATCTTTCCAGACAGATTCATAATAAACTGATGGTTAGCAGGAAAAACCATCCAGTTCTTCACATTCAATTAACTTATGAAACATACTTTATTTTCTCTGTGGTCACAagtcaatgcgttttcttttcaCAGCGTCCCGTTCTGCACTCCTCCCCTCGTCCAGTCCACTGTAAGCGATTCCTGGCAAAGATGGCATAGGACTTGTCCATGAATGGTCTCACAGGTGACCACATCATGAAGCGACCCAACCAGCCAAGGCCCACTGCACTGTAAATGACTGCAAACGCTGGGATCCCACGGTGAACCCAGGCCGGTTTCTCTGCAGAAATTGGAGGAAGCGGATCTCCGTCACACATATGGGACAAAGCCCATCATACAGCACCTGAAACAGAGCAGGGAAAATATTCTTCAATTTTCTCTTTCAGCACTgaatatttcattaaaatgaataatagTGGAGAAAAGAGATTTCCAGCTGGCAAAGGTTGAGTGGCAACTTCAATATTTACAGTGTTGTGTACAAATAGCTCCTGTCCAGTTCTGCTTCGATATGGTATACCACGTGTTTGAGCCACATTTGATTCAGAGAAGGGGTCCAATTACTAATGTTCTagacaaccaatgatcaaaggGGAACAATAAATAATACTGCGAAAACTGGAGCTCAACAAAATATTGAAATAGAATGCTAGCTGAAATGATATTATCACCATAAGAGttaatattgttttgtattgCACTATTCAAATGAAAACCTTTAGAAATTACAAAATCAAGaaaactgaatgaatgaaaattaCAACCCTTTGTTTCAAAATGGATTACTTGTGCAACAGTATAATTTTTCATCAGTACATAATATTTAACTTGGAAGACAACTTCAAATAACTTTTGCAAGTAACCATTTCcaccaggaaaagaaaagaaaaagtattgAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66127 True 1336 lncRNA 0.36 2 13445139 13446735

Neighbor

gene id symbol gene type direction distance location
pm20d1.2 pm20d1 coding upstream 152827 13284381 ~ 13292312 (+)
lemd1 NA coding upstream 160888 13272566 ~ 13284251 (+)
LOC120558998 LOC104924681,LOC104961357 coding upstream 185818 13255847 ~ 13259321 (+)
LOC120558583 NA coding upstream 201846 13237470 ~ 13243293 (+)
dnajc11a dnajc11,LOC104924676,LOC100696684,LOC102780517 coding upstream 210130 13222993 ~ 13235009 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding downstream 1573 13448308 ~ 13451907 (+)
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding downstream 27531 13474266 ~ 13499442 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding downstream 80573 13527308 ~ 13531488 (+)
LOC120559547 mitf coding downstream 117890 13564625 ~ 13605435 (+)
LOC120559296 ppp4r2 coding downstream 195894 13642629 ~ 13649896 (+)
G49502 NA non-coding upstream 11922 13432599 ~ 13433217 (+)
G49474 NA non-coding upstream 66730 13365731 ~ 13378409 (+)
G49461 NA non-coding upstream 137567 13306840 ~ 13307572 (+)
G49346 NA non-coding upstream 516668 12928256 ~ 12928471 (+)
G49334 NA non-coding upstream 516959 12921005 ~ 12928180 (+)
G49562 NA non-coding downstream 170142 13616877 ~ 13641874 (+)
G49572 NA non-coding downstream 190131 13636866 ~ 13639093 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding downstream 278353 13725088 ~ 13732249 (+)
G49591 NA non-coding downstream 302823 13749558 ~ 13750842 (+)
LOC120558703 NA non-coding downstream 311852 13758587 ~ 13992115 (+)
LOC120559134 dvl1 other upstream 558915 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 600705 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 786831 12652384 ~ 12658308 (+)
G49209 NA other upstream 986700 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 1141736 12283427 ~ 12303403 (+)
G49538 lmod3 other downstream 85655 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 211997 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 666280 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 758862 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 1118132 14564867 ~ 14567456 (+)

Expression


Co-expression Network