G49538 (lmod3)


Basic Information

Item Value
gene id G49538
gene name lmod3
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13532390 ~ 13534922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66161
TTCACGTGGAAAAAATGCTCTTCTTTATCGAGAGCTTTAACAccatcaacagtaacgttaagaAACCTAACTTGTCAAATGTTATAAGTACTTCTAAACACAGGATCCCATCTTGATAAATCTCACAGTAATAATTCTTGGATACTCACAGCTTTGAGATAGGCCACGTTGCTCTTTTTGATTGCATCTAGGAGCTGGTCGCGGGGTGTGACATCAACCTTAGGGGGCAGTCGTCTGCGAGGGATGGGCTTCAAAGTCTTAATCACGTCAGTCAGGTTTTCTCTTTCATCTGCCACCTCTCCACTGCCTGCATCCTTCTCTTTGGGAGTCTTCCTCAGTTTGAAACTTGCATTCTCTGGTCTCCTGTTATCCCTCGGGTCCAGGTCCAGAAAAGGGTCACGTTTCTTGGGAGTCCTCTTCAACTGGACGTCCCTCAATGCGTTTGCTGGTTCGGCACTGGGTTGTTTGGGAGTGCTCTTGTGTTTGAGTTCCTTCTGAGGCTCCGGCTGTCCCGTCTGGTGGTGGGTTTGAGGTACAGTGCTCAGTTCAAACGAGGGTGGGACAAGCCCATGCTCCTGCAGGACTTCTAGAGGCGGTATGTAGCCGAGCATCTCAAGTAAACCAGGCGGTAGGTTAAGGCTGTTCTCATACATCTGCATCAGCTCCCTCTGCTCCTTcacttgctgctgcttttgctCCTCCTTCCTCAGCTGCCTCTGGCGGTCCAGATTCCTGGTTAGAAGGTTGGTCACCACCATCCTGGGCCCCGGCTGCTCAAAGTGGTAGCCCATCTTCAGGAGGGTGTTGTTGGCCTTGAGCAGGCGTGAGATCTCCATCTCTGCGTGGTGACCCAACATGTGCCTCTGGTTGTGAAAACGCAGCTCTGTGAGAGTCTCGTTGAATTGGAGGCAGCGGATGATGGCGACGATGCCCTTCCCGGTCACAAAGTTGGACTCAATATTCAAAGTGGTGATGCCGCGATTCTCTCGTAACATGTTGGCCAGGTTGAAAGCTATGTTTTCATCAACACCAGTGTTGGCAATACTGAAGGTTTTCACATGTTTGTTCTTCTTCAAAGCGTTGACATAATCCAAGAGCATCTCTTTGGGAATGTTTTCTATGTTGTTGAGGTTTACCTCAGTGATAGACGGGTTGTTGTTGCGGATTTTGTCGAGCGTCGACTCCAAGTTTGTCTCATTTCCTGAGGGTcttgatgtcatttttatatTGTTGAATGCCAGCTTTGGAAGTTGTAATTTGTtaatttttctctcttctttcggCAGGGGCTCATCATTGGTTTTGCTTATTTTGGGCTCCTCTGGAGCCTCTTTGGGAAGCGAAGAGTCTGTAGTTCTCTCTTCTTTCGGCAGTGGCTCATCATTGGTTTTGCTTATTTTGGGCTCCTCTGGAGCCTCTTTGGGAAGCAAAGAGTCTGTAGTTTgaatttcctctttctcttcaacTTGTGATGTGCCGTGTTTTGGGGCTATGCTCTCACTCTTCTCCTTTGTGTCTGGAAAAGGCTGATTGTCATCTGCAttgttttttgacactttttctctGTTAGCGTGTAGAGGATCTACATGTTTGTCTATATTTTCACGTTTGCCATTGTTCACAAGTGACTTCACctcttcctcatcttcctcatcCACCCCTTTGTCCTTTTCATCGTTTTCATCCCTCTCGTCAAGCTCTTCAACAATTTCCTCAATGATCTCTATAATTTCCTCTCCATCTGTATCATCTACAGCTTCTTCCTCAATGACTTCCTCTATTACTTCATATTCCACATCTTCTTCCTCGTCTTTCTTTTCAGTTTCCTCCCTCAAAGCTTTCTgatgaaaacaacatcagaccAAGGTTTGTTATtccaaaaactttttttttttaaattctgccTGTAACATTTAAATCTAAATTGATCTGTACCTAAACATTCAAGGGTTTGACTTCTTACCTCACTGGGCAGCAGAATAGCAGGCACTCTTTCTTCCTCAAGCATACGGTTGGACTCTTTCTCCCAGTAGAGGTAACCAACCAGGGATCTGTGGTCGAACGTCCCTGTTGGAGGCTTCTCCGTCTGGTCCTTTTGCCTCTGCCCCACCGGTACCCTCTCATCTGGGGCAATAATAACATCCATCTCACTCTGGAGCTCCTTAAGCTCCTCGGGTGAAAGCATTGCAAGGAGTTCATCCTCGTCCATATCCTCTTCATTGAGATCCTCAAAGTCTTTCCTACTGTTTGACATATTTGCGTAAACTTCTTTCTTCCGCTGATATCAAAAGGAAGGACAACTTCTGTCCAATCTATGACTCAGGACAGAGCAAACTGAGAAGCCTCTGACTTTGACTTCAGCTAGGAACCATTTGCTCCTACCGCATGTGGAGTCTAAAATTAAATCCTGTGAACTGCATGGAAGATATTTAAGGTACAAGCAGGGAGCCATGCTAAAATTCTTCTTTCAGCCCCTGCTCCCAGCTGGCCTGGCCATCAGGATCTTTTGGGATGACAGTTGCTTCAGGCAAAG

Function

symbol description
lmod3 Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3).

NR:

description
PREDICTED: leiomodin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66161 True 2533 TUCP 0.46 1 13532390 13534922

Neighbor

gene id symbol gene type direction distance location
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding upstream 902 13527308 ~ 13531488 (+)
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding upstream 32948 13474266 ~ 13499442 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding upstream 80483 13448308 ~ 13451907 (+)
pm20d1.2 pm20d1 coding upstream 240078 13284381 ~ 13292312 (+)
lemd1 NA coding upstream 248139 13272566 ~ 13284251 (+)
LOC120559547 mitf coding downstream 29703 13564625 ~ 13605435 (+)
LOC120559296 ppp4r2 coding downstream 107707 13642629 ~ 13649896 (+)
guca1b guca1b coding downstream 117446 13652368 ~ 13654660 (+)
oard1 oard1,LOC106909399 coding downstream 120631 13655553 ~ 13657376 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding downstream 610305 14145227 ~ 14185140 (+)
G49508 NA non-coding upstream 85655 13445139 ~ 13446735 (+)
G49502 NA non-coding upstream 99173 13432599 ~ 13433217 (+)
G49474 NA non-coding upstream 153981 13365731 ~ 13378409 (+)
G49461 NA non-coding upstream 224818 13306840 ~ 13307572 (+)
G49346 NA non-coding upstream 603919 12928256 ~ 12928471 (+)
G49562 NA non-coding downstream 81955 13616877 ~ 13641874 (+)
G49572 NA non-coding downstream 101944 13636866 ~ 13639093 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding downstream 190166 13725088 ~ 13732249 (+)
G49591 NA non-coding downstream 214636 13749558 ~ 13750842 (+)
LOC120558703 NA non-coding downstream 223665 13758587 ~ 13992115 (+)
LOC120559134 dvl1 other upstream 646166 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 687956 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 874082 12652384 ~ 12658308 (+)
G49209 NA other upstream 1073951 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 1228987 12283427 ~ 12303403 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 123810 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 578093 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 670675 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 1029945 14564867 ~ 14567456 (+)
G49776 NA other downstream 1039620 14574542 ~ 14577572 (+)

Expression


Co-expression Network