G49572


Basic Information

Item Value
gene id G49572
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13636866 ~ 13639093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66214
tgaaatgtggcaaaaggtcgaaaagttcaagggggccgaatactttcgcaaggcactgtattatAGTAGTTCTCAAAAAAATCTGCTCTGATCTATGCAGCCCAGAATAGTCAATCTAACTCCCTCTCATACActttgtcacacacaaacacaggggaAAGGTGCCTTCGGTGAGATGTATATATGGTTCAGCttcctaattttttttcattttatttcaataataCAAATGCAGCCTTTTACATTACCACAGAAAAGAAATCCTAAAAACTATGGATTTGAGAGACACTGAACTTTGTTTTGGTGCAGTAGTAAACCATCTCTTAATAACTTACAGATTTGACCCTGCTGCAGGGGTTGCATCACTTCACCAAACACCCCCGATTTGTGCAAATACACTAAAATAGGCCCTGAGCAGTCGCTCAAGGAGATCTAAGTGAGACTTAGATCTACATCTTCTGGTGTCATGTGTTGTGTTTATCATTTATCCTGGGGCCAATAGTATCTACAAAGAGTAGGCTTCACAAATTCCATTTTACACTGGTCATATGAAACACAATTTCAACGTTATCATCTACACATCTCAAGTTACtattaaaagtagaaaaataacaaaaacccaaatcagaaaaggttacacaaAACCAAGGTAGATTTGGTCTCagttatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagtgcttGATTTGGGACGGATGCTTAAACAAAATGACAACCACAACACTGCAAATTTGCTTCAAATTCTACAGAATAGAAATGATTGCATATATTTCTCAGCATCTACTCATGATGATTTGTGCGCTGAGGTCATTTTATTGTAACAAGAACATATTTCCTTTTACAATCCGCTGATatcctaaaaaagaaaagaaaaaacgaaTGTGCAATTTTCTGCTCTAAAGATTTATGTTAGGCAACAGTATTTGGCTGTAACATACAAAACGGAGAAAAGAGCTCCCTAGAAAAGCCTTGCAATGCATTGTTAAGATAAAGGTTTGCTTTGTGAAACTAGGGCTCCTCTTAGATCTAAAAATGAGATTTAATTCAAAGACCTAGCTGTGTCTGTGCTCAGCAAACTGCACACAATATGCTATAATACATCTAAATAAACCTGACATTTACATGTACATGATCGGCTGTTTTGGTTAGGGAATTGCAAAATGTGGaagtataaaaacacacaaacactgccaCAGATAAAATcaaactgacatttttttttgttttcgactaaaataaaaaaaagtattttggatATTATTATGAATGTGCTCAGAAGATGGGAAATTCCATTGATTGAGAATCATAATACATGGGCTACATTTAATGTACTGTAATTAAAGCCGGTGTAGGCAGTTTTCTGAAAAAGGCAACAACAACCAAAACAGCCCTCCTTCTGcagctctctccctctctatcctaagcccctcccaccagACGAGCACCGGCATATCATCTCCATTGTGATTGTGATCCCGATGCCGTTGTACAGCTGTTAGCAGAAGGCTAAACTATTATCAacattttctctccatctctgaaaCGCTTCGCCGATATTGACGCGTGTTTTATTGCCTTTATTGCCTGTCTTCCATTTTTTTGCGTTGCTTTGCACCATTGGCAGTTTCTGCCAGTGCTGTAACAGCAACTTTTTCTGCAGGATTATCCAGCATTGAATCAGGCCTTCACCATCTGAAGGAACGTACACACGCATCTACTTTTATAAACCAGCCAATAGGAATGCTCTTtatctgaaatgacctgtgattggccaaattCTCCCATCACGGGCAAGATTTTCTAAAACCCGaaaaacagagccaagaggaggtgcagaagtctggttttctctcagaccacttgaattacaatatgctgaaaggttATTACTTTGTATTTAACGACACCAAAACAAATGCCTACCCTAGCTTTAAGATAATACATTAAGCAACTATGAACTCAGTTGCTTCAAAATGTGCCCAAATATTATCCAAAACATGTTCACAAGTAAAAAACATGTATATCTCTAGACTGCTGATGTGCAATATGTGCTAATTTCTTCGACCTCCTTCAAAAGCGTGGTGCTCCTCATG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66214 True 2145 lncRNA 0.38 2 13636866 13639093

Neighbor

gene id symbol gene type direction distance location
LOC120559547 mitf coding upstream 31431 13564625 ~ 13605435 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding upstream 105378 13527308 ~ 13531488 (+)
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding upstream 137424 13474266 ~ 13499442 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding upstream 184959 13448308 ~ 13451907 (+)
pm20d1.2 pm20d1 coding upstream 344554 13284381 ~ 13292312 (+)
LOC120559296 ppp4r2 coding downstream 3536 13642629 ~ 13649896 (+)
guca1b guca1b coding downstream 13275 13652368 ~ 13654660 (+)
oard1 oard1,LOC106909399 coding downstream 16460 13655553 ~ 13657376 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding downstream 506134 14145227 ~ 14185140 (+)
LOC120558842 anks1a coding downstream 592042 14231135 ~ 14305611 (+)
G49508 NA non-coding upstream 190131 13445139 ~ 13446735 (+)
G49502 NA non-coding upstream 203649 13432599 ~ 13433217 (+)
G49474 NA non-coding upstream 258457 13365731 ~ 13378409 (+)
G49461 NA non-coding upstream 329294 13306840 ~ 13307572 (+)
G49346 NA non-coding upstream 708395 12928256 ~ 12928471 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding downstream 85995 13725088 ~ 13732249 (+)
G49591 NA non-coding downstream 110465 13749558 ~ 13750842 (+)
LOC120558703 NA non-coding downstream 119494 13758587 ~ 13992115 (+)
G49598 NA non-coding downstream 125466 13764559 ~ 13766112 (+)
LOC120558704 NA non-coding downstream 140174 13779267 ~ 13798652 (+)
G49538 lmod3 other upstream 101944 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 750642 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 792432 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 978558 12652384 ~ 12658308 (+)
G49209 NA other upstream 1178427 12452535 ~ 12458439 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 19639 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 473922 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 566504 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 925774 14564867 ~ 14567456 (+)
G49776 NA other downstream 935449 14574542 ~ 14577572 (+)

Expression


Co-expression Network