LOC120558703


Basic Information

Item Value
gene id LOC120558703
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13758587 ~ 13992115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66249
cttgaaaaTAACGTTATTaataacacctgtgcttttcctactatgacaagtcaaatgTCTGCTGGGAAAAAAAGGTCTATATTGTGGTAAAAATGCCAAACTTTCATGGTCAGCAACAACACTACTTTTTCATTTGGATTCAGTGATGATCAGACCATGTGAGTGATATGTACACCAGTCTCTGCTGATATTTGTTCTGATGCGCTAGTTTGTTTACCTGCTGCACACGTCACGCCCTTAATTGGCATAAGCCACACCTGCCTACCTGTTGAGGACCAAGTGGAACTGCGCccaaattttgtgctgCAACAACTTGTGGAGAAAAACTGGAGCTGGCCTTGGGGGAGGACTCCTTCAGACTTGTAGTGGACGACTTTTAAAGTTTCTGTGGAGTTTTAATAGACTGGTGAGACGGATGGCCTAAGTGGAGAACTTCTACAACACATTGACTCCATGAAGGACGGACTTGTGGATGGAGTTTTTCAAGCAGACCTCAATAAggtgagtcccgactgccctgcctctgactgaacatgtcaggtcggccaaaatgaaggctgacagcccctcggacggacgacggcgcggaacacaccgaacagactcaagtcaccaacctcgccagactgtccaacggccgattatcggcccggTGTGTAGCTGCCTTTAGACTAATCTGTCCTATGTGTGCATGATGTCTTACCTACACTCAGCTTACTGAAGTAAAGTCATTTTATAGTTTTGACAAATGTCCAACGTGTAACATAATGGCGGCGTTTGTGCACTGGCCACAACACTCTTTAAGACTTAGCTGTATTAAGATATTTTGATGCAGTCTTGTTCTCATATTAACCATCACATATTTAATGTTATCAGAAGTTTTCAGTCTTGACTCAAAagggttattattattattaacaatgttaatgttaatgttaatatgATACATATTGAAAAGGCAAGTAAAATGCTCTGCTTTGTTAAAGTGTAActacagttttgtttttgtgtctaagtgactgatgggaacaacaatcattaacattggtccagtattaagcaagatcgctgcagtcggcaggagcaaaacaagctacaaagtaagttaatagggcgatcgtgcagcttgtatttacattcataaaagtgcttgttttgccattgaCAGGCTCGGatcaatattctaagtgtctgacaacatcatggaaaggatttctaaggaggtcgacctttctgttaaagattatgatcctttttttaaacataaaaacctcTGCGAAATTGTGttcgctaaagccaccagactccatgtaaataaacagtaatttcagCATCGGAAAATACAGTTCATTCAAAgtccacagaaacaaaatagaaactataaaaagccgttttgggtcgtcgttccacttttccaactattggttgaaataaacacatagtttactgattgtGTGAAAATAtattggctctatacacgctaaaaggaAGTCTGgtggtttagcgctagcgacctcagagctgtttctggttaaacaaaaggtctcaaagagttttaaaaaggcctatctctgtagggatcctttccacaATGTCGTCAGACACTTCTAAGCCTTTTAGTGGACGAAACTGAACATTTGCCCCaaagggttacattgcagcccggtctgtggctgccaGTTACAGAGTTCacgtttaatactggaccaatttaaaaaattgttgttcctatctgtcacttacacacaaaatcataggaaaatagggtccagattGAAAAAAgctgtagttaccctttaacatgGTCACCATTATTTTAACATGGTATACCATTATTGCACCATGACTTAAAGGTGGAAGAGTGGCTAAACATCTATGTAATCTGTGCCACAGAATACAGTGCAACAGCAGTTACCCTATCCAGTCTATTACCCAGCAGCCTTTAGCTTATCTTATGAGCCCCTGGCTGTAGTCTTATATTTACTGGACAGATATGACAGTGGTGTCAATCTTATATCTAACTCTTGGCAtgaaagtgaataagcatatttcccaaaatgtcaaactgtttctttaATATTAGCAAATCCATTCTTAATCTTTGTCTGAAGATTGTTGTTAGATGTGAGTAAATCAGATTAAAACATTGTGATGTAGCTGGTGTAGTTTAAATGAGGGTACCAGGACTGCATGTCCCAGCAGTCTTTTCTGGTAAAGAGTCATTTTTGTGTCCAAAATTCCTTTGGAAGTGAAGGCTCTGGTGTCTAATGAGTTCAAGAGAAAGTTCTCTTCTATTAGCCTCCATTTTTTTAGAACCAGTGCATGTGTGGCTGGTGGTGAAAGGAACAGGATAATGAGCGGTTTCCAAGACCTGAAGCAGGACTTCATGACTGAGTGGGGCCTTGATATAATAAAGACCATTGGCTTAAAGTAATCCAGGTTTGGACTTTCGGTTTCTTAGCGGGTGTCGTGACAGACACTGGCAGTAGCTTAGTTAGTTACAGTGGCATGTAGCAACGTAGGAGCAAAACCAGAAACGGCAGGAGTGGCATGAAGCATCAGCAGAGTTAGACTGTATCCTGTCCGATTTTAAAGACCGCCTCATTGATTTATATGAAAAGGGGGATTGGTGACTGTTCAATCAGGTATAACTTCAGTGTTTGGCCTTTTGAGCATCCGGTAGCATAGCAGCTGCTTTAAGTCAGAGTTAATGCCAGTAGTGATTTCCTACCTCACTTCATTTAATAAAGATCCCAGTCAGCTACCGAGCAGTGAGCTGCTGCGTGCCGTATTAATTAGTTCAGCATTAATGGTAGCTTTCCATTCGCTTAACTCAAGCTCATGTGCATAGTGTAGGGGGTCTAAGGGTGGCTGCATGTTTTATTCTGTTAGGCTTAGCAAAGCCTCtagtttatttatcatttcaaggtC
>XR_005639166.1
TTCTGATGCGCTAGTTTGTTTACCTGCTGCACACGTCACGCCCTTAATTGGCATAAGCCACACCTGCCTACCTGTTGAGGACCAAGTGGAACTGCGCccaaattttgtgctgCAACAACTTGTGGAGAAAAACTGGAGCTGGCCTTGGGGGAGGACTCCTTCAGACTTGTAGTGGACGACTTTTAAAGTTTCTGTGGAGTTTTAATAGACTGGTGAGACGGATGGCCTAAGTGGAGAACTTCTACAACACATTGACTCCATGAAGGACGGACTTGTGGATGGAGTTTTTCAAGCAGACCTCAATAATTCTATTGCATCATGACAAATTCTCAAACCTTGGACGTTGATCATCGCTTCTGTTTTACGTCCATCTACCTCAAAGCGGTATTTCCCAGAGTGCTCTT

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66249 True 2931 lncRNA 0.41 3 13758587 13992115
XR_005639166.1 False 404 lncRNA 0.46 3 13758781 13762003

Neighbor

gene id symbol gene type direction distance location
oard1 oard1,LOC106909399 coding upstream 101211 13655553 ~ 13657376 (+)
guca1b guca1b coding upstream 103927 13652368 ~ 13654660 (+)
LOC120559296 ppp4r2 coding upstream 108691 13642629 ~ 13649896 (+)
LOC120559547 mitf coding upstream 153152 13564625 ~ 13605435 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding upstream 227099 13527308 ~ 13531488 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding downstream 153112 14145227 ~ 14185140 (+)
LOC120558842 anks1a coding downstream 239020 14231135 ~ 14305611 (+)
LOC120559736 NA coding downstream 315847 14307962 ~ 14317786 (+)
scube3 scube3 coding downstream 333687 14325802 ~ 14402540 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding downstream 539039 14531154 ~ 14539601 (+)
G49591 NA non-coding upstream 7745 13749558 ~ 13750842 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding upstream 26338 13725088 ~ 13732249 (+)
G49562 NA non-coding upstream 116713 13616877 ~ 13641874 (+)
G49572 NA non-coding upstream 119494 13636866 ~ 13639093 (+)
G49508 NA non-coding upstream 311852 13445139 ~ 13446735 (+)
G49619 NA non-coding downstream 131537 14123652 ~ 14124536 (+)
G49663 NA non-coding downstream 231180 14223295 ~ 14223723 (+)
G49660 NA non-coding downstream 236255 14228370 ~ 14229092 (+)
G49665 NA non-coding downstream 237530 14229645 ~ 14230394 (+)
G49718 NA non-coding downstream 410591 14402706 ~ 14403546 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 33597 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 223665 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 872363 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 914153 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 1100279 12652384 ~ 12658308 (+)
hmga1a hmga1,LOC103355299 other downstream 120900 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 213482 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 572752 14564867 ~ 14567456 (+)
G49776 NA other downstream 582427 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1780102 15772217 ~ 15798957 (+)

Expression


Co-expression Network