G49718


Basic Information

Item Value
gene id G49718
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14402706 ~ 14403546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66419
aaaaaaaatgtaaagtctGTCAAGAAATGTAATAGGTGtgtaaaaaaaagctttgatttcaaaatggCGACCAAAACAGGGTACAATGATTTAACTTCAGTTCTAATAAGTCACATCTTGTTAGGATCTGCCAAGTTAAAATGAGTTGTTTGACATTTGGGAAatacttatttgctttcttactGAGGAATTACAAGATTGATCCCACTCTTCTGAACAGTTagtttagcacaaagactggaaccCACTAGCCTTGCTCTggccaaaggtaacaaaatccacataCCAGCATCTCTAAAGCATTACATCTGGTTCATTTAATCAGTAACAATGCAAAAATGTCACCTGGAGTCTCTGCTTGATGCCAAGCAACACAAAAACTCCAGGAAGGACTCTAACAAAGTGAATACATTTCTTAAAATGTAGGGACTATTCCTTCAAAGTCAGTCACCACCACAGCAGTCAAATTGGAACAGATGACTGCATTGTCACAGATGAAACAAACTTTTATAAATAAATGGTCAACGCTTGCTCtgatatgacatttttttggaGTGTAAATTTTGTCCCCACTCGTGTAAATAAAGTAAGTGAGATGGTACACGTCATATCATACAAACTGTATTTTCAAAGTACCAAAACTTTAGGCTGACATGGGAAGTTAACCACATGGTCTAACTTTAGGGCAATTCTTTGCCACGCCATGAAGAACTCTTATCCGACCCTCTAATAGTCTCAGATTAAATCCATGTAATAGATGCCAACAGGCAGCAGCATCCCAGTGTGCTCACTCTGCCCTCGTGCCCCAAAATTCCCCCTCCCACCCCATCTTTCCTGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66419 True 841 lncRNA 0.39 1 14402706 14403546

Neighbor

gene id symbol gene type direction distance location
scube3 scube3 coding upstream 166 14325802 ~ 14402540 (+)
LOC120559736 NA coding upstream 84920 14307962 ~ 14317786 (+)
LOC120558842 anks1a coding upstream 97095 14231135 ~ 14305611 (+)
LOC120558708 pacsin1,LOC102311157,LOC102795192,LOC103372886,LOC102200946,LOC107391251,LOC104932789 coding upstream 217566 14145227 ~ 14185140 (+)
oard1 oard1,LOC106909399 coding upstream 745330 13655553 ~ 13657376 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding downstream 127608 14531154 ~ 14539601 (+)
aaas aaas coding downstream 148687 14552233 ~ 14561394 (+)
LOC120559201 gls2,LOC104942574 coding downstream 196731 14600277 ~ 14616442 (+)
LOC120559203 LOC102794447,LOC101484947 coding downstream 216602 14620148 ~ 14672002 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding downstream 272726 14676272 ~ 14684010 (+)
G49665 NA non-coding upstream 172312 14229645 ~ 14230394 (+)
G49660 NA non-coding upstream 173614 14228370 ~ 14229092 (+)
G49663 NA non-coding upstream 178983 14223295 ~ 14223723 (+)
G49619 NA non-coding upstream 278170 14123652 ~ 14124536 (+)
LOC120558704 NA non-coding upstream 604054 13779267 ~ 13798652 (+)
G49717 NA non-coding downstream 349 14403895 ~ 14409162 (+)
G49720 NA non-coding downstream 7821 14411367 ~ 14417663 (+)
G49743 NA non-coding downstream 115228 14518774 ~ 14525189 (+)
G49761 NA non-coding downstream 141849 14545395 ~ 14546722 (+)
G49762 NA non-coding downstream 143318 14546864 ~ 14547095 (+)
uhrf1bp1 uhrf1bp1 other upstream 174818 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 281684 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 677716 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 867784 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 1516482 12860721 ~ 12886224 (+)
G49773 LOC103358639 other downstream 161321 14564867 ~ 14567456 (+)
G49776 NA other downstream 170996 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1368671 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1372671 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1482444 15885990 ~ 15969331 (+)

Expression


Co-expression Network