G49773 (LOC103358639)


Basic Information

Item Value
gene id G49773
gene name LOC103358639
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14564867 ~ 14567456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66523
CTTAAgtcaagcttttattttctcagGACAGACCGGAGAGGAAGCTGGCCACAGTACAAGATGCAGCAATTCAGATGCATCATTACTCTACAAAATGCTTGAtttcagtcaaaaaaaaaaaaatctttatttatgCCTCTTAGTTCAGACAAAGCCATCTACGCCCAGCACCACCCTGACAACGCAGAACTAATACAGTACTTTTGTTCCTGTTGTGATGAGATTCTCTCATATGAAAATACACACTTGCATCACAGTCTTAAactttcacacactcacacacacagactatgCACTCACAGTCAAGAGTAACTGACCTCATGAAATACAagtataacaacaaaaaaacatctaagCACACATGAATGGTTCTGCTGAAAGAAATACGTCCCCACGCCATTTCCGTTTTTATTCAAAACTCAATTAAAAATCAACTTCATTCTTAATTCggttttccttttattttccaaTTTACATCAATTAGAAgtgtaacaaaataaaaacaaaaatgatcataataaaattaattaaaaaaatgtacacgccctcacacacacacagacaacccaCCCTGGTTGTTTTTGAGCGACCGTCCTCGGAGTCCTGCGTTTAGCTTTTCGGGCTCCAAGGGAGGCTTTCCGAGTAGCCCCTGTCTCCCCTGTCTTTACCCGACTGCACCCCTCCTCCAGAgtggagtgtgagtgtgtggtgtgAGGCTAGTGGGAATtaggtttgggtggtgggggcgACTGAATTACAGAACTCATAGCACCTTCTGAAGAGAGCAACCCAAAGCAAAGATGGCCATTCAGCCCCATATCCACCTGAAAGCTAATTTTTGGTCAGCTCAGATTTAAACTCAAcattttcactttgtttttcAGCGTGAGGTAGCTTTAAACAATCTGGATggctacaataaaaaaaaagcaaaacaaatttccctCAAATTCTTTCAAAATATTTTTAGTTTGGACGAGAACTGGGCCTTCCTCTGATGGGCAGTCAAGGGGTACAGGACATTGAAACATACATCCCAAATGTAACCTCACTTTCCAAAAAGTGTTGGTGTGCATATAGACACATGTACGCACATAATgtggaaatatatataaaaccatCTGGTTGTTTATAAACACAGACTTTTACAACAATAGAACCAAGGATTTATAATACACAGTAAAGGGTTGACTCCTGGTCACGATGGACAGGCCTGGAGCACCTGGATTTGATTTTACTGAGGATATTTATTTTGGTCTACACTGATTCAAAatgctgtatttgtgtgtcagGAGGGAAACAGGGAGGGAGGTGGAGTAGGACTGGGACAGAGGCTGTGCGGCTGTTCTGTAGTGGAAAGGGGGCTTGTCTTACTTACAAAGTAAACCCGTCCAGTCCTACCTCAACTCTGCCCATTCAGGTTAGACAATAAATAAGTGACATCAAGTCATGTTTCTGTTCTCCATAACTTGTTCGCTTGGTCCCTCTTCCTCCTGGCTCTGACTCATTCCCGTCAACAGTGGGCCATGGGAAACATGACTGGATCTCAGGAAGCGGGTTGACAGAGAATGCTGGTGTGGTGTACAGATATTGCCGGTGCCCTTCAGTGCTAACATCCAGGGAGTACAACTTGGAGAGCACTTCGTTGTGAGAGAAAAAGTATCAATTTTCTTTTATAATTTCCAGTCTTCTTTAttgtggaagtgtgtgtgtaatggttCATGGTtgagtttatttatttcctgtgttttttggGGGGCCATTGTGATATTCCACTTTACAAGAAGCAGACTGCGCCTACTTCCACTCCAAACTCCTGATCCGCTCCTCCGATGTCCATGGGAGCAATGTCCACGATTGGCAGACGGGAGGTTTTCTGTGTTTTGTACTCAAAGACAGTCTTGCCCCACCGGTCTGTATGTTTCTTGCAGCCATCCTCCAACACGGTGTATGTGAAGCGACTGGTGCCCTCTGCGCGGATCTCCACATCGTTGGAGCCCTGCAGCTTCAAAGCCTTCTTCAGGTTGCCTGTGGCCTGGTCCATGTAGGCAATGCTGTTCTTGCAGTGGTAAGTGAGATTCTGGGATGCCTCAGTGGACAGAAGCCTCAAGAAGGTCAGCTGGATACTGGCAGCGTTGGCAACAGGGCCATCCTCGGCGTAGTTAAAGTGGAATCCTCCATTCATGGTCTCTGCGAACCAGACGTGTTTGCGGTCCTTGCTCTTGCTGGTCCACCAGTTCTTCTTTGGTACCTCGGCGATGCTTGGGTTGACGCAGGTCTCTCCTGTCTCCATGTTACAGAAGACCTTGATGGCATCGGCTGTGCTGCCAATGTTGGGATCAACCCAGTAGTTAC

Function

NR:

description
PREDICTED: collagen alpha-1(II) chain-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66523 True 2355 TUCP 0.44 3 14564867 14567456

Neighbor

gene id symbol gene type direction distance location
aaas aaas coding upstream 3473 14552233 ~ 14561394 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding upstream 25266 14531154 ~ 14539601 (+)
scube3 scube3 coding upstream 162327 14325802 ~ 14402540 (+)
LOC120559736 NA coding upstream 247081 14307962 ~ 14317786 (+)
LOC120558842 anks1a coding upstream 259256 14231135 ~ 14305611 (+)
LOC120559201 gls2,LOC104942574 coding downstream 32821 14600277 ~ 14616442 (+)
LOC120559203 LOC102794447,LOC101484947 coding downstream 52692 14620148 ~ 14672002 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding downstream 108816 14676272 ~ 14684010 (+)
LOC120558822 NA coding downstream 136237 14703693 ~ 14705687 (+)
LOC120559093 cacnb3,LOC102792394,LOC106525262,LOC103467623,LOC107090276,LOC100704754,LOC102209744 coding downstream 213780 14781236 ~ 14805118 (+)
G49764 NA non-coding upstream 13308 14551310 ~ 14551559 (+)
G49762 NA non-coding upstream 17772 14546864 ~ 14547095 (+)
G49761 NA non-coding upstream 18145 14545395 ~ 14546722 (+)
G49743 NA non-coding upstream 39678 14518774 ~ 14525189 (+)
G49720 NA non-coding upstream 147204 14411367 ~ 14417663 (+)
G49775 LOC107731244 non-coding downstream 869 14568325 ~ 14569597 (+)
G49778 LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244 non-coding downstream 17993 14585449 ~ 14590776 (+)
G49883 NA non-coding downstream 335460 14902916 ~ 14970803 (+)
LOC120559279 NA non-coding downstream 640286 15207742 ~ 15241127 (+)
G50002 NA non-coding downstream 708657 15276113 ~ 15276360 (+)
uhrf1bp1 uhrf1bp1 other upstream 336979 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 443845 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 839877 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 1029945 13532390 ~ 13534922 (+)
LOC120559134 dvl1 other upstream 1678643 12860721 ~ 12886224 (+)
G49776 NA other downstream 7086 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1204761 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1208761 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1318534 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 1736856 16304312 ~ 16311017 (+)

Expression


Co-expression Network