G49775 (LOC107731244)


Basic Information

Item Value
gene id G49775
gene name LOC107731244
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14568325 ~ 14569597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66525
GGGGGTCCAATGGGGCCAGGCTGTCCATTTGATCCGTCTTTGCCAGCAGGTCCGGATGGTCCAGATGGTCCCTTAGGTCCGCTTGGTCCGGCAGGTCCGGCAGCTCCAGCATCTCCAGCGGAACCAGGAGGTCCAGGAAGACCCTGCAGACCAGTGAAACCGCGGTGACCCTTCTGTCCCCTCTCTCCAGTCTCACCAGACTCTCCCTTGTCTCCACGTGGCCCTTGGGGTCCAGCCATTCCTCTAGCTCCAGCGGGGCCTGAGGGTCCCGCAGGTCCTTGAGCACcactctctcctctgtctccctgcTTGCCGAGGGGTCCGAC

Function

NR:

description
PREDICTED: collagen alpha-1(II) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66525 True 326 lncRNA 0.64 5 14568325 14569597

Neighbor

gene id symbol gene type direction distance location
aaas aaas coding upstream 6931 14552233 ~ 14561394 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding upstream 28724 14531154 ~ 14539601 (+)
scube3 scube3 coding upstream 165785 14325802 ~ 14402540 (+)
LOC120559736 NA coding upstream 250539 14307962 ~ 14317786 (+)
LOC120558842 anks1a coding upstream 262714 14231135 ~ 14305611 (+)
LOC120559201 gls2,LOC104942574 coding downstream 30680 14600277 ~ 14616442 (+)
LOC120559203 LOC102794447,LOC101484947 coding downstream 50551 14620148 ~ 14672002 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding downstream 106675 14676272 ~ 14684010 (+)
LOC120558822 NA coding downstream 134096 14703693 ~ 14705687 (+)
LOC120559093 cacnb3,LOC102792394,LOC106525262,LOC103467623,LOC107090276,LOC100704754,LOC102209744 coding downstream 211639 14781236 ~ 14805118 (+)
G49764 NA non-coding upstream 16766 14551310 ~ 14551559 (+)
G49762 NA non-coding upstream 21230 14546864 ~ 14547095 (+)
G49761 NA non-coding upstream 21603 14545395 ~ 14546722 (+)
G49743 NA non-coding upstream 43136 14518774 ~ 14525189 (+)
G49720 NA non-coding upstream 150662 14411367 ~ 14417663 (+)
G49778 LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244 non-coding downstream 15852 14585449 ~ 14590776 (+)
G49883 NA non-coding downstream 333319 14902916 ~ 14970803 (+)
LOC120559279 NA non-coding downstream 638145 15207742 ~ 15241127 (+)
G50002 NA non-coding downstream 706516 15276113 ~ 15276360 (+)
G50003 NA non-coding downstream 707849 15277446 ~ 15277646 (+)
G49773 LOC103358639 other upstream 869 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 340437 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 447303 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 843335 13658732 ~ 13724990 (+)
G49538 lmod3 other upstream 1033403 13532390 ~ 13534922 (+)
G49776 NA other downstream 4945 14574542 ~ 14577572 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1202620 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1206620 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1316393 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 1734715 16304312 ~ 16311017 (+)

Expression


Co-expression Network