G49778 (LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244)


Basic Information

Item Value
gene id G49778
gene name LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14585449 ~ 14590776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66528
GGTCCAGGTGGGCCAGGGGGTCCGGGGTTCCCAGGGGTGCCAGGCTCACCATCTCTTCCACGAGGTCCTGCATTTCCCTTATCACCCTTAGCGCCAGCTTCTCCACGGACTCCCTGCTCACCTGGGGGGCCcaTAGGGCCTGGTGGTCCTTTTGGTCCTACAACATCTGCAATCTCTCCTGGTTCACCTTTCTGGCCCTTAGCACCAATCGTTTGGTCGTCCTCTTCCTGACATCTGACCACGGATAGTAAAACAACTTGGAATGCTACAAGTAGCAGAACAGTCCTTGAGTCCACAAAGCTGAACATGTCTAAATATTAGACATGCAGTAGCTTGGGTGAGAAGTGAAGGATGAGACCAGGCTTTCAGTCAGTGGTGTGTTAAGTGTGTGTTCCCAGAGACTTATGGCACCATGCAGTCAAACCCTCCAAAATCTAAGTGGAATCCAACGCGGGGCCCCAGCTGGCACTCTGCACCCACCGCGTCAG

Function

NR:

description
PREDICTED: collagen alpha-1(II) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66528 True 488 lncRNA 0.54 6 14585449 14590776

Neighbor

gene id symbol gene type direction distance location
aaas aaas coding upstream 24055 14552233 ~ 14561394 (+)
pcbp2 LOC103358643,LOC100702237,LOC101072611,LOC101159823,LOC103144045,LOC107094832,LOC107391117,LOC101487433 coding upstream 45848 14531154 ~ 14539601 (+)
scube3 scube3 coding upstream 182909 14325802 ~ 14402540 (+)
LOC120559736 NA coding upstream 267663 14307962 ~ 14317786 (+)
LOC120558842 anks1a coding upstream 279838 14231135 ~ 14305611 (+)
LOC120559201 gls2,LOC104942574 coding downstream 9501 14600277 ~ 14616442 (+)
LOC120559203 LOC102794447,LOC101484947 coding downstream 29372 14620148 ~ 14672002 (+)
LOC120559695 LOC103358635,LOC104952763,LOC102794158,LOC101484659 coding downstream 85496 14676272 ~ 14684010 (+)
LOC120558822 NA coding downstream 112917 14703693 ~ 14705687 (+)
LOC120559093 cacnb3,LOC102792394,LOC106525262,LOC103467623,LOC107090276,LOC100704754,LOC102209744 coding downstream 190460 14781236 ~ 14805118 (+)
G49775 LOC107731244 non-coding upstream 15852 14568325 ~ 14569597 (+)
G49764 NA non-coding upstream 33890 14551310 ~ 14551559 (+)
G49762 NA non-coding upstream 38354 14546864 ~ 14547095 (+)
G49761 NA non-coding upstream 38727 14545395 ~ 14546722 (+)
G49743 NA non-coding upstream 60260 14518774 ~ 14525189 (+)
G49883 NA non-coding downstream 312140 14902916 ~ 14970803 (+)
LOC120559279 NA non-coding downstream 616966 15207742 ~ 15241127 (+)
G50002 NA non-coding downstream 685337 15276113 ~ 15276360 (+)
G50003 NA non-coding downstream 686670 15277446 ~ 15277646 (+)
G50014 NA non-coding downstream 831543 15422319 ~ 15422608 (+)
G49776 NA other upstream 7877 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 17993 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 357561 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 464427 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 860459 13658732 ~ 13724990 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 1181441 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 1185441 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 1295214 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 1713536 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 1732045 16322821 ~ 16379645 (+)

Expression


Co-expression Network