G49883


Basic Information

Item Value
gene id G49883
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14902916 ~ 14970803 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66661
GGCATGGGGCAGGTGATGGAGTAaaggggtgggggttggggtttGGGTAGAGTAAAGAGGGCAACACTCTGGGTTTGTGGTCGTTTCAAGTTGGGTTAGACCAGTGAAGATGGGCATGCTTTTCATTATTCATCTGAATTTATctccattttagttttttttttttttaggttcattttgttttaaaaacctGACTAAAGATGTATGATACCATTAGATTTTACCAGGGTTTCACTATTTTCAATCACTACATTTTATCTgtgggtttgtgtttgtgtgtgtgaatacctcttgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgt
>TU66663
GGCATGGGGCAGGTGATGGAGTAaaggggtgggggttggggtttGGGTAGAGTAAAGAGGGCAACACTCTGGGTTTGTGGTCGTTTCAAGTTGGGTTAGACCAGTGAAGATGGGCATGCTTTTCATTATTCATCTGAATTTATctccattttagttttttttttttttaggttcattttgttttaaaaacctGACTAAAGATGTATGATACCATTAGATTTTACCAGGGTTTCACTATTTTCAATCACTACATTTTATCTgtgggtttgtgtttgtgtgtgtgaatacctcttgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtg
>TU66668
GGCATGGGGCAGGTGATGGAGTAaaggggtgggggttggggtttGGGTAGAGTAAAGAGGGCAACACTCTGGGTTTGTGGTCGTTTCAAGTTGGGTTAGACCAGTGAAGATGGGCATGCTTTTCATTATTCATCTGAATTTATctccattttagtttttttttttttttattttttttttttttttttttttttttaaaaaaggtcccatggcatgaaaatttcactttatgaggtttttaacattaatatgcgttcccccagcctgcctatggtcccccagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctg

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU66661 True 357 lncRNA 0.41 2 14902916 14954390
TU66663 False 346 lncRNA 0.41 2 14902916 14937460
TU66668 False 332 lncRNA 0.41 2 14902916 14970803

Neighbor

gene id symbol gene type direction distance location
mipb mip,LOC100706349,LOC103373044,LOC102789611 coding upstream 391 14900650 ~ 14902525 (+)
LOC120559525 LOC107391160,LOC103467615,LOC107090264,LOC102789905,LOC104951673 coding upstream 4809 14892057 ~ 14898107 (+)
baz2a baz2a,LOC102790184 coding upstream 14785 14868908 ~ 14888131 (+)
LOC120558671 ptges3,LOC102790477 coding upstream 35893 14862512 ~ 14867023 (+)
naca naca,LOC107737655,LOC106571941 coding upstream 49099 14845337 ~ 14853817 (+)
LOC120559459 NA coding downstream 41413 15012216 ~ 15032560 (+)
trnak-cuu NA coding downstream 42092 15012895 ~ 15012967 (+)
si:ch73-181d5.4 NA coding downstream 61904 15032707 ~ 15070413 (+)
LOC120559274 NA coding downstream 101118 15071921 ~ 15076945 (+)
kcnk15 LOC104919657,LOC103357353,LOC104951678,LOC100707244 coding downstream 117618 15088421 ~ 15115184 (+)
G49778 LOC102302837,LOC101485799,LOC100702507,LOC103358639,LOC104919652,LOC103385584,LOC106524244 non-coding upstream 312140 14585449 ~ 14590776 (+)
G49775 LOC107731244 non-coding upstream 333319 14568325 ~ 14569597 (+)
G49764 NA non-coding upstream 351357 14551310 ~ 14551559 (+)
G49762 NA non-coding upstream 355821 14546864 ~ 14547095 (+)
G49761 NA non-coding upstream 356194 14545395 ~ 14546722 (+)
LOC120559279 NA non-coding downstream 236939 15207742 ~ 15241127 (+)
G50002 NA non-coding downstream 305310 15276113 ~ 15276360 (+)
G50003 NA non-coding downstream 306643 15277446 ~ 15277646 (+)
G50014 NA non-coding downstream 451516 15422319 ~ 15422608 (+)
G50011 NA non-coding downstream 666680 15637483 ~ 15639301 (+)
G49776 NA other upstream 325344 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 335460 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 675028 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 781894 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 1177926 13658732 ~ 13724990 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other downstream 801414 15772217 ~ 15798957 (+)
G50045 tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 other downstream 805414 15776217 ~ 15867369 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 915187 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 1333509 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 1352018 16322821 ~ 16379645 (+)

Expression


Co-expression Network