G50045 (tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084)


Basic Information

Item Value
gene id G50045
gene name tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15776217 ~ 15867369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66852
CAAAGACCAGCGAAGCAAACCAGGAATGAAATTGTAAACTAAGTGTTGTTGTCTGCTTCTCAATAACAATTGCTGAAAGGCACCGACCTAAGGACAGAACATAACATGTCTGCATCAGGCCAAACACTTTGCAAGGATCTCAACTCTGATCTTAAAGTGAGTATTATGAGAACATTGTAATAAgattgttgttaaaatgaaaaatttacaaaaatgacTGCTCCGACAAATGCATCTTGTTTATTACATGGTCGCACATTCCAAACTGACTTTTCGTGTAGAAATATGCAGGAGTTCCAGGGCATGAGAGGGGGATAAGAAGTCCTAAGGGTATCtaaaacatacagtaatgtATACAATGTGTACATAAGaacacagtacagtatacaaACTAGATCCAGTACATTGCTCTAAAAGTATGATTAGTCTACCAGAGCCTGGTGTAAAACTATGTTGAGTCATGGATATGTTCTGCTTTGTGCACACATACATTTTCTGCCCAGCTAAACAACATCAGCCCCTCAGTAAGATGATTTGTAAACTGGCTGTGGCACTTTAATGTTAAGATTTAgtcagaaacaaacacaaagttgATATTTCGAGCAGCTAAACTGGTACACTATGTGGCCTCTATAGAAAATACAAGTAATTTGGATACATTTACACAAATTCTGTATACATGGGCTCCAAAACTAGTTACAAACTCTATTTACAACGATGCAAGAGATGGtagaaaaatacagaaacatTCAGCTACAGTATTCGACTGAATCTTGCAAAGTCGTTCCATTGTTTCTATCAGCGGCATCCAATTGAGATTCCAGTTTTCCACAGATGACCGTGGAGTCACagagaaatacaaaaataacactCTGGATCTTCTCTTGCTCAGGATTACTCCACTCCTTTCATGAACTCCAAAAACTCATCGTAGTCAATTTTGCCGTCGTTGTTCTTGTCCCCGTCTTTCATCAGCTCCTCAATGTCGTCCTCAGTAATTGCCTCTCCTGTAGATTCCAGCATCATTTTCAGCTCGTCCAGGTCAATGTAACCATCTGCGTTCTTGTCAAACATGCGAAACAGCTCTGCCAGTTCTTCCTCTGACTTCCCTTTGCTGTCGTCCTTCATGCACCTTACCATCATGACCAAGAACTCGTCAAAGTCCACCGTCCCACTCCCGTCTTCATCCACCTCATCAATCATCTCCTGCAGCTCCTCTGGTGTGGGGTTCTGGCCTAACATCCTCATCACCTTCCCCAGTTCCTTGGTGCTGATGCAGCCATCTTCTGCATCTTGTACGAAGATGTCAAAGGCGGCCTTGAACTCATTTTTCTGTTCTTCTGTCAGCTGCTCAACCGCTGCCTTGTAGATGTCGTTCATGTTGGAGGCTCGTCTGCTGCCTGTCCTGGTGGCGTCCTGGCACAGAGGAAGGAGGTACTGTCCAGCTCAGAGCAGGACACTGGCCCCATCCTGGGAGGGTTTTATAGCTggagcctgtctctgtctggTCCTTCCCCGGGCGGACCAGCCTCCCCTCTGTTTGTGCCTACCCGTGTGTCCatcaatgtgtgtttgtgtatgtgtgtcatttGGCCAATCTATCACAATCACCGGGCTCAGATAAAAATGCGGCAGCTCTTAGGGGGCATACTTGGGAATGGAATGAAGTGAGGGGGGCATGGTGAAGCCTA
>TU66853
ggaatgtgcgtGAGTTCCAGGGCATGAGAGGGGGATAAGAAGTCCTAAGGGTATCtaaaacatacagtaatgtATACAATGTGTACATAAGaacacagtacagtatacaaACTAGATCCAGTACATTGCTCTAAAAGTATGATTAGTCTACCAGAGCCTGGTGTAAAACTATGTTGAGTCATGGATATGTTCTGCTTTGTGCACACATACATTTTCTGCCCAGCTAAACAACATCAGCCCCTCAGTAAGATGATTTGTAAACTGGCTGTGGCACTTTAATGTTAAGATTTAgtcagaaacaaacacaaagttgATATTTCGAGCAGCTAAACTGGTACACTATGTGGCCTCTATAGAAAATACAAGTAATTTGGATACATTTACACAAATTCTGTATACATGGGCTCCAAAACTAGTTACAAACTCTATTTACAACGATGCAAGAGATGGtagaaaaatacagaaacatTCAGCTACAGTATTCGACTGAATCTTGCAAAGTCGTTCCATTGTTTCTATCAGCGGCATCCAATTGAGATTCCAGTTTTCCACAGATGACCGTGGAGTCACagagaaatacaaaaataacactCTGGATCTTCTCTTGCTCAGGATTACTCCACTCCTTTCATGAACTCCAAAAACTCATCGTAGTCAATTTTGCCGTCGTTGTTCTTGTCCCCGTCTTTCATCAGCTCCTCAATGTCGTCCTCAGTAATTGCCTCTCCTGTAGATTCCAGCATCATTTTCAGCTCGTCCAGGTCAATGTAACCATCTGCGTTCTTGTCAAACATGCGAAACAGCTCTGCCAGTTCTTCCTCTGACTTCCCTTTGCTGTCGTCCTTCATGCACCTTACCATCATGACCAAGAACTCGTCAAAGTCCACCGTCCCACTCCCGTCTTCATCCACCTCATCAATCATCTCCTGCAGCTCCTCTGGTGTGGGGTTCTGGCCTAACATCCTCATCACCTTCCCCAGTTCCTTGGTGCTGATGCAGCCATCTTCTGCATCTTGTACGAAGATGTCAAAGGCGGCCTTGAACTCATTTTTCTGTTCTTCTGTCAGCTGCTCAACCGCTGCCTTGTAGATGTCGTTCATGTTGGAGGCTCGTCTGCTGCCTGTCCTGGTGGCGTCCTGGCACAGAGGAAGGAGGTACTGTCCAGCTCAGAGCAGGACACTGGCCCCATCCTGGGAGGGTTTTATAGCTggagcctgtctctgtctggTCCTTCCCCGGGCGGACCAGCCTCCCCTCTGTTTGTGCCTACCCGTGTGTCCatcaatgtgtgtttgtgtatgtgtgtcatttGGCCAATCTATCACAATCACCGGGCTCAGATAAAAATGCGGCAGCTCTTAGGGGGCATACTTGGGAATGGAATGAAGTGAGGGGGGCATGGTGAAGCCTA
>TU66854
TACATTTCAAACTCCTCACCATCGTAGTCAATTTTGCCGTCGTTGTTCTTGTCCCCGTCTTTCATCAGCTCCTCAATGTCGTCCTCAGTAATTGCCTCTCCTGTAGATTCCAGCATCATTTTCAGCTCGTCCAGGTCAATGTAACCATCTGCGTTCTTGTCAAACATGCGAAACAGCTCTGCCAGTTCTTCCTCTGACTTCCCTTTGCTGTCGTCCTTCATGCACCTTACCATCATGACCAAGAACTCGTCAAAGTCCACCGTCCCACTCCCGTCTTCATCCACCTCATCAATCATCTCCTGCAGCTCCTCTGGTGTGGGGTTCTGGCCTAACATCCTCATCACCTTCCCCAGTTCCTTGGTGCTGATGCAGCCATCTTCTGCATCTTGTACGAAGATGTCAAAGGCGGCCTTGAACTCATTTTTCTGTTCTTCTGTCAGCTGCTCAACCGCTGCCTTGTAGATGTCGTTCATGTTGGAGGCTCGTCTGCTGCCTGTCCTGGTGGCGTCCTGGCACAGAGGAAGGAGGTACTGTCCAGCTCAGAGCAGGACACTGGCCCCATCCTGGGAGGGTTTTATAGCTggagcctgtctctgtctggTCCTTCCCCGGGCGGACCAGCCTCCCCTCTGTTTGTGCCTACCCGTGTGTCCatcaatgtgtgtttgtgtatgtgtgtcatttGGCCAATCTATCACAATCACCGGGCTCAGATAAAAATGCGGCAGCTCTTAGGGGGCATACTTGGGAATGGAATGAAGTGAGGGGGGCATGGTGAAGCCTA

Function

symbol description
tnnc1 Enables several functions, including calcium-dependent protein binding activity; cytoskeletal protein binding activity; and protein homodimerization activity. Involved in cardiac muscle contraction; regulation of muscle contraction; and ventricular cardiac muscle tissue morphogenesis. Part of cardiac Troponin complex. Implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13.

NR:

description
PREDICTED: troponin C, slow skeletal and cardiac muscles

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66852 True 1691 lncRNA 0.44 6 15862808 15867369
TU66853 False 1411 lncRNA 0.46 7 15776217 15867369
TU66854 False 784 TUCP 0.52 5 15863912 15867369

Neighbor

gene id symbol gene type direction distance location
mtg2 mtg2 coding upstream 75841 15697279 ~ 15700376 (+)
LOC120559909 ss18l1,LOC102784650 coding upstream 79339 15687325 ~ 15696878 (+)
lsm14b NA coding upstream 90026 15682257 ~ 15686191 (+)
LOC120558693 cdh4,LOC100707506,LOC101477622 coding upstream 138794 15375411 ~ 15637423 (+)
kcnk15 LOC104919657,LOC103357353,LOC104951678,LOC100707244 coding upstream 661033 15088421 ~ 15115184 (+)
syn2a LOC103368776,LOC108232134,LOC102310081,LOC100708766,LOC102780991,LOC102197631,LOC101471639 coding downstream 55005 15922374 ~ 15934225 (+)
cnbpa cnbp,LOC100709667,LOC101470196 coding downstream 85133 15952502 ~ 15956674 (+)
LOC120559633 LOC102199705,LOC100709941 coding downstream 90214 15957583 ~ 15961003 (+)
LOC120559610 fbln2 coding downstream 235990 16103359 ~ 16127076 (+)
LOC120559808 NA coding downstream 267971 16135340 ~ 16136813 (+)
G50029 NA non-coding upstream 70749 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 106673 15667249 ~ 15669544 (+)
G50011 NA non-coding upstream 136916 15637483 ~ 15639301 (+)
G50014 NA non-coding upstream 353609 15422319 ~ 15422608 (+)
G50003 NA non-coding upstream 498571 15277446 ~ 15277646 (+)
G50077 NA non-coding downstream 81880 15949249 ~ 15951172 (+)
G50218 NA non-coding downstream 418188 16285557 ~ 16285759 (+)
G50280 NA non-coding downstream 558249 16425618 ~ 16425820 (+)
LOC120558722 NA non-coding downstream 676900 16544269 ~ 16545835 (+)
G50318 NA non-coding downstream 699632 16567001 ~ 16569382 (+)
G49776 NA other upstream 1198645 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 1208761 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 1548329 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 1655195 14113015 ~ 14121022 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other upstream 2051227 13658732 ~ 13724990 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 18621 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 436943 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 455452 16322821 ~ 16379645 (+)
brpf1 brpf1 other downstream 512675 16380044 ~ 16396208 (+)
LOC120559923 NA other downstream 530300 16397669 ~ 16408461 (+)

Expression


Co-expression Network