G50410 (LOC103368435)


Basic Information

Item Value
gene id G50410
gene name LOC103368435
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16826880 ~ 16829880 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67374
GCAGATAATAGCCTATATTCTATACATGTACAGCTGGAACAATAAGATTTCAATGCTGGCATTAGCAGTGTTATATACGGGAAGAGGACAAAACCATTGCAACATGTTTACCTACCATATTCAGGTACAGATCCATCTCCCCGTTTGAGGACGAGCCGCGCCCTCCGACCACCGTTCTTGATAAGTTCAATGGCACGTGAATGCTTCATGTTCTTTGTGCTCTCACCATTAATCTCCAGGATCTCATCTCCCACCCTCATCTTGCCATTTCTGACAGCAGCCCCATCCTCTGCTAGTCTTAACACATACAGGTCCATGTTGTACTCCCGTCCTCCTCTCAGGCTGAAGCCAAAACCTTTACTGTCCCGCTCGAGGTCCACAGAGTAGAACTCAGCATCCTGTGTTGTCTGAGTTTGtatgggtggaggaggaggagctccTTTCGACTTTGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67374 True 453 lncRNA 0.48 3 16826880 16829880

Neighbor

gene id symbol gene type direction distance location
LOC120559617 LOC107391139,LOC106528268 coding upstream 6454 16818839 ~ 16820426 (+)
LOC120559776 NA coding upstream 86181 16732994 ~ 16740699 (+)
LOC120559487 qrich1,LOC103362963 coding upstream 100641 16719172 ~ 16726239 (+)
qars1 qars,LOC102790389 coding upstream 108692 16709978 ~ 16718188 (+)
LOC120559511 LOC102311931,LOC106676355,LOC102214845,LOC102799804 coding upstream 147536 16670828 ~ 16679344 (+)
ren ren,ctse coding downstream 104997 16934877 ~ 16940282 (+)
csf1b NA coding downstream 117281 16947161 ~ 16954280 (+)
slc12a5b LOC102216153,LOC101469905,LOC100697313,LOC102785612,LOC102296309,LOC106907346,LOC103145107,LOC108232092,LOC106935434 coding downstream 191835 17021715 ~ 17068012 (+)
LOC120558576 rbm39,LOC103373755,LOC101469619,LOC103385498,LOC102215854 coding downstream 239540 17069420 ~ 17079294 (+)
ognb LOC104956315,LOC103373751 coding downstream 276911 17106791 ~ 17108823 (+)
LOC120559512 NA non-coding upstream 143346 16680581 ~ 16683534 (+)
G50326 NA non-coding upstream 200662 16605965 ~ 16626218 (+)
G50320 NA non-coding upstream 245887 16580059 ~ 16580993 (+)
G50318 NA non-coding upstream 257498 16567001 ~ 16569382 (+)
LOC120558722 NA non-coding upstream 281045 16544269 ~ 16545835 (+)
G50493 LOC103467546,LOC102230394,LOC105927130,LOC106947997,LOC103145058,LOC101167287,LOC104935375,LOC108231917 non-coding downstream 268742 17098622 ~ 17104964 (+)
G50505 LOC103354436 non-coding downstream 304808 17134688 ~ 17135490 (+)
G50509 NA non-coding downstream 321302 17151182 ~ 17151913 (+)
G50518 NA non-coding downstream 333299 17163179 ~ 17163665 (+)
G50700 NA non-coding downstream 838958 17668838 ~ 17670631 (+)
LOC120559923 NA other upstream 418419 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 430672 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 447235 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 515863 16304312 ~ 16311017 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other upstream 857549 15885990 ~ 15969331 (+)
eif2d eif2d other downstream 148017 16977897 ~ 16994701 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 356031 17185911 ~ 17197173 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 911491 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1426012 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 1852263 18682143 ~ 18686302 (+)

Expression


Co-expression Network