G50505 (LOC103354436)


Basic Information

Item Value
gene id G50505
gene name LOC103354436
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17134688 ~ 17135490 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67525
GGTCCTTCTCCAGCTGCTGCTGTCTCTGCAGCATTGCCTCTTTCTCAGAGCGCAGAGCTGCACAGTCACTCTGCAGGTTGCCCTTGTCTTTCTGGTGAGCCTTGAGGAGTTCCTCCTTCTCAGCCTTGAGGGAAGCACACTCATTTTGCAGACCACTCCTTTCCTTCTGGTGCTTATTTAGGGTGTCTTGTTTTTCAGCTCGCAGGACTGAACACTCCTTCTGAAGGCCATTACACTCCGCCTGCATTGACTGCAGCTCACTGGCTTGTATTTCTGCAGTTTTCTGCCACTGCTTGCTCTGTTGTTGAAGGTCACGCTGTAGATTGTCAATCTCACGCTCATATTTGTTGGCAGTCTGACGCCATTTTTCCAGGTCCTTCGAGACAGCTGCCAGGTTGGTCTGGATAGTGGCAACGTCATGGTCCCGCTCAGCAGTGGCTGCCTCCAGGGCACGTTTCAGTGCCTTCACCTCGTCACGTGCACTTAGTAGCTCGTCATGTGAACTGGAAGAGACATCTATCTGCTCTCTGAGAATGCCCGCTTCATCTTGGAGCTGCCGCAGCTGGCCT

Function

NR:

description
PREDICTED: sarcolemmal membrane-associated protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67525 True 569 lncRNA 0.53 2 17134688 17135490

Neighbor

gene id symbol gene type direction distance location
ognb LOC104956315,LOC103373751 coding upstream 25865 17106791 ~ 17108823 (+)
LOC120558576 rbm39,LOC103373755,LOC101469619,LOC103385498,LOC102215854 coding upstream 55394 17069420 ~ 17079294 (+)
slc12a5b LOC102216153,LOC101469905,LOC100697313,LOC102785612,LOC102296309,LOC106907346,LOC103145107,LOC108232092,LOC106935434 coding upstream 66676 17021715 ~ 17068012 (+)
csf1b NA coding upstream 180408 16947161 ~ 16954280 (+)
ren ren,ctse coding upstream 194406 16934877 ~ 16940282 (+)
LOC120559311 LOC104956311,LOC104935436,LOC103354435,LOC103467553,LOC102231596 coding downstream 6214 17141704 ~ 17150065 (+)
abtb1 abtb1,LOC102780990 coding downstream 31189 17166679 ~ 17174370 (+)
LOC120558844 slc6a6,LOC100694392,LOC102780524,LOC101165803 coding downstream 52672 17188162 ~ 17193594 (+)
LOC120559003 slc6a6,LOC100694392,LOC101463803,LOC102780524 coding downstream 58470 17193960 ~ 17204623 (+)
ssuh2rs1 LOC104935521 coding downstream 110852 17246342 ~ 17251285 (+)
G50493 LOC103467546,LOC102230394,LOC105927130,LOC106947997,LOC103145058,LOC101167287,LOC104935375,LOC108231917 non-coding upstream 29724 17098622 ~ 17104964 (+)
G50410 LOC103368435 non-coding upstream 304808 16826880 ~ 16829880 (+)
LOC120559512 NA non-coding upstream 451154 16680581 ~ 16683534 (+)
G50326 NA non-coding upstream 508470 16605965 ~ 16626218 (+)
G50320 NA non-coding upstream 553695 16580059 ~ 16580993 (+)
G50509 NA non-coding downstream 15692 17151182 ~ 17151913 (+)
G50518 NA non-coding downstream 27689 17163179 ~ 17163665 (+)
G50700 NA non-coding downstream 533348 17668838 ~ 17670631 (+)
G50725 NA non-coding downstream 614795 17750285 ~ 17776236 (+)
G50727 zbtb46,LOC104941523,LOC102795869 non-coding downstream 640912 17776402 ~ 17835766 (+)
eif2d eif2d other upstream 139987 16977897 ~ 16994701 (+)
LOC120559923 NA other upstream 726227 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 738480 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 755043 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 823671 16304312 ~ 16311017 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 50421 17185911 ~ 17197173 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 605881 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1120402 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 1546653 18682143 ~ 18686302 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 2320987 19456477 ~ 19463712 (+)

Expression


Co-expression Network