G50523 (slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524)


Basic Information

Item Value
gene id G50523
gene name slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17185911 ~ 17197173 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67547
GTGACAGAGAATCAGGTTAAGCGCGGACGGAGGGAGGCTGTCGCTTTAAGAAGTTGTTACATGGAGAAGCTGGTGATTTTCCACTCAAACTGATATTAAACCAAACGCGCACAAGCTCGTAAAAACAATGGCCTCACAGAAAAATAGATGAAATAGTTTCACTTAGCGTTAAAACGTAGGCTACAGAATCAAGGAACAACAGGCTGCTTAGTACGAGGACAGCATGGCACAAAAAGAGAAGTTCCAATGCTTAAAGGATTTTCACAAGGACACCCTGAAACCTTCACCGGGGAAGAGCCCAGGCACGCGGCCTGAGGACGAGGCTGAAGGCAAGGCTCCTCAGAGAGAGAAGTGGGCCAGTAAGCTCGACTTTGTCCTGTCCGTAGCCGGAGGCTTCGTTGGATTAGGAAACGTCTGGCGCTTCCCTTACCTTTGTTATAAAAATGGCGGAGGTGCATTTCTCATCCCTTACTTCATCTTCCTGTTTGGGGGTGGCCTGCCTGTGTTCTTCCTGGAGGTCGCACTGGGCCAGTACACCTCTGAAGGAGGGATCACCTGCTGGGCCAAGCTCTGCCCCATCTTCACTGgtATTGGCTATGCCTCTGTCGTGATTGTATCTCTACTAAACATCTATTACATTGTGATCTTGGCCTGGGGACTCTACTACCTGTTTCAGTGCTTTCAGCCGGAGCTCCCCTGGTCGAAATGCAACCAGCCCTGGAACACCGAATACTGTATAGAGGACACAGTCCGCAAGAACAAGACCCTATGGCTAGCAGCCAACATGACCAACTTTACCTCCCCTGTCACTGAGTTCTGGGAACGCAACGTCCTGAGCATCTCCACTGGGATTGAGGACATAGGGCCCCTGAAGTGGGACCTGGCCCTGTGTCTCCTAGCAGTGTGGGTTGTCTGCTTCTTCTGCATCTGGAAGGGAGTCAAGACCACTGGGAAAGTGGTGTACATAACAGCAACTTTCCCATTTGTGATGCTGATTGTGCTGCTGGTGCGTGGAGTGACCCTGCCTGGGGCATCTGAAGGGATCAAATTCTACCTTTACCCTAACCTGACCCGCCTACAAGACCCAGAGGTGTGGATTGATgccgggttttttttttttttttttttttgc

Function

symbol description
slc6a6 Enables alanine transmembrane transporter activity and taurine transmembrane transporter activity. Involved in alanine transport; amino acid import across plasma membrane; and taurine transport. Located in plasma membrane. Part of apical plasma membrane; basolateral plasma membrane; and microvillus membrane. Biomarker of multiple system atrophy.

NR:

description
PREDICTED: sodium- and chloride-dependent taurine transporter isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67547 True 1132 TUCP 0.50 7 17185911 17197173

Neighbor

gene id symbol gene type direction distance location
abtb1 abtb1,LOC102780990 coding upstream 11541 17166679 ~ 17174370 (+)
LOC120559311 LOC104956311,LOC104935436,LOC103354435,LOC103467553,LOC102231596 coding upstream 35846 17141704 ~ 17150065 (+)
ognb LOC104956315,LOC103373751 coding upstream 77088 17106791 ~ 17108823 (+)
LOC120558576 rbm39,LOC103373755,LOC101469619,LOC103385498,LOC102215854 coding upstream 106617 17069420 ~ 17079294 (+)
slc12a5b LOC102216153,LOC101469905,LOC100697313,LOC102785612,LOC102296309,LOC106907346,LOC103145107,LOC108232092,LOC106935434 coding upstream 117899 17021715 ~ 17068012 (+)
ssuh2rs1 LOC104935521 coding downstream 49169 17246342 ~ 17251285 (+)
LOC120558338 dcaf1,LOC102778624 coding downstream 54177 17251350 ~ 17269432 (+)
LOC120559551 LOC100699720,LOC103354465 coding downstream 75780 17272953 ~ 17323030 (+)
LOC120559455 LOC103354448,LOC104961977 coding downstream 177830 17375003 ~ 17394723 (+)
LOC120559200 LOC103354450 coding downstream 314499 17511672 ~ 17518414 (+)
G50518 NA non-coding upstream 22246 17163179 ~ 17163665 (+)
G50509 NA non-coding upstream 33998 17151182 ~ 17151913 (+)
G50505 LOC103354436 non-coding upstream 50421 17134688 ~ 17135490 (+)
G50493 LOC103467546,LOC102230394,LOC105927130,LOC106947997,LOC103145058,LOC101167287,LOC104935375,LOC108231917 non-coding upstream 80947 17098622 ~ 17104964 (+)
G50410 LOC103368435 non-coding upstream 356031 16826880 ~ 16829880 (+)
G50700 NA non-coding downstream 471665 17668838 ~ 17670631 (+)
G50725 NA non-coding downstream 553112 17750285 ~ 17776236 (+)
G50727 zbtb46,LOC104941523,LOC102795869 non-coding downstream 579229 17776402 ~ 17835766 (+)
G50752 NA non-coding downstream 746539 17943712 ~ 17944815 (+)
G50753 NA non-coding downstream 760025 17957198 ~ 17957644 (+)
eif2d eif2d other upstream 191210 16977897 ~ 16994701 (+)
LOC120559923 NA other upstream 777450 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 789703 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 806266 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 874894 16304312 ~ 16311017 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 544198 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1058719 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 1484970 18682143 ~ 18686302 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 2259304 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 2570453 19767626 ~ 19768564 (+)

Expression


Co-expression Network