G50727 (zbtb46,LOC104941523,LOC102795869)


Basic Information

Item Value
gene id G50727
gene name zbtb46,LOC104941523,LOC102795869
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17776402 ~ 17835766 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67815
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcatttgAGTATGTTACTCATGATGGTTCTAGATCATTGTCGCGCATCACCCTACAGCATTTCCATTCAAAGGAAGGCCTGCCCACGGTGGGACGAATGGGTAAAGAGAGCAGAGGATTCTGCCTGAGAGATCACAAGAGATCTTTAGAGATTGGTTGACGAGCCGCTGATAGGTGTCTGACAGATTCTAGGAGATCCAGGTGAAGTCCCTCTCGCTCCCGTTCTGTTGCTCCCCCTCCTGTGCCGAGGAGTCGCTCTCCTCCTTCTCATTGTCCAGTGCTCCGTGTGCCTCGGAGGTCATCCCCGAGTCCTTCCACTTCCCTCTTTCATCTTCCCCTTCTCCCATCATCTCCCCGTCCCCTTCGACCAtcatctcctcctccccctctccgtCACCGTCGCACTCCGCCTGGTCATCGTGGAAACGGTCGCCGGGATACAGCTCCTCCTCCGGAGAGATGTCTCCTCCCACCTCCCCGTGGTGGTCCAGCAGAGCGGCCATGCCCCGGCCAGAGCAGTCGGCGCAGACGCCGTGACGCCTCGAGCCGTGTTTGATTCCGACGCTGGCTGCTGACATGAAGACCCGGCTGCACACTTTACACACATACTTCTT

Function

symbol description
zbtb46 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB46 (zinc finger and BTB domain containing 46).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 46-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67815 True 711 lncRNA 0.57 2 17776402 17835766

Neighbor

gene id symbol gene type direction distance location
birc7 birc7 coding upstream 86535 17686147 ~ 17689867 (+)
slc17a9b slc17a9,LOC102799335 coding upstream 188822 17576722 ~ 17587580 (+)
LOC120558532 gid8 coding upstream 201259 17571779 ~ 17575143 (+)
LOC120559200 LOC103354450 coding upstream 257988 17511672 ~ 17518414 (+)
LOC120559455 LOC103354448,LOC104961977 coding upstream 381679 17375003 ~ 17394723 (+)
prpf6 prpf6 coding downstream 204161 18039927 ~ 18057366 (+)
aar2 aar2,LOC103372053 coding downstream 225423 18061189 ~ 18064974 (+)
LOC120559899 emilin3 coding downstream 305058 18140824 ~ 18156119 (+)
slc9a8 slc9a8 coding downstream 356121 18191887 ~ 18212077 (+)
rnf114 rnf114,LOC103364155,LOC104964933,LOC104925098 coding downstream 505944 18341710 ~ 18349313 (+)
G50725 NA non-coding upstream 166 17750285 ~ 17776236 (+)
G50700 NA non-coding upstream 105771 17668838 ~ 17670631 (+)
G50518 NA non-coding upstream 612737 17163179 ~ 17163665 (+)
G50509 NA non-coding upstream 624489 17151182 ~ 17151913 (+)
G50505 LOC103354436 non-coding upstream 640912 17134688 ~ 17135490 (+)
G50752 NA non-coding downstream 107946 17943712 ~ 17944815 (+)
G50753 NA non-coding downstream 121432 17957198 ~ 17957644 (+)
G50817 NA non-coding downstream 297676 18133442 ~ 18133815 (+)
G50846 NA non-coding downstream 401752 18237518 ~ 18237810 (+)
G50860 NA non-coding downstream 431699 18267465 ~ 18267887 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 579229 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 781701 16977897 ~ 16994701 (+)
LOC120559923 NA other upstream 1367941 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 1380194 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 1396757 16322821 ~ 16379645 (+)
opn7b LOC103364157,LOC103467481 other downstream 420126 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 846377 18682143 ~ 18686302 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 1620711 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 1931860 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 2160711 19996477 ~ 20000438 (+)

Expression


Co-expression Network