opn7b (LOC103364157,LOC103467481)


Basic Information

Item Value
gene id opn7b
gene name LOC103364157,LOC103467481
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18255892 ~ 18300333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU67987
GGGCTACCGGAGAACCACGGGACCTGCAGACACTGTCCTTACCCTGAAACAGCTACTGGTACCAGAGAAAACTTTACAGAATACAGCCCCCAGCAGACTGTGAGAATACTTAAAGGATCAATACATAATGAGGTTGCTGTCAGTCAGCTCTCCAATGAGTTGCAGAGTGACTTCCTGTAGAGAATCAAACAAAGTCAGACAATGAGAAGGTAAATAAAAAGAGTAGTGGAGAAAAAGATGGCAAGAATGAAGGTTTAAAGACACTAATTGCAAGGAAAAATggagtgaaagagaaaaagataaTAATTGAATGAAGGAAAAGAGTTTCTAACTTTAAAGGTCAAAGTTTTAAAACTCAAATAGGTGATACTGCCAAAAAAAGGCCAAGAAGTTAGAAGCCAATAAAGGAGGATAAGCGAGCCGAACAGCCAACATGCAACCACAATATTCATCAGGT
>XM_039799290.1
CTGGGGGAGAGAGTGGGAGCTGCAGGCTGTTAGAAACAGAGCGAGAAGGAGAGACCAGCAGCACTAGGCAGCATCACGTCTGTCTCTATCTGTCGTCTATTGGATCTTCCTCAGCACAGCTGTCTGAGTGCTGCTGCCTGCGAGTGGATCCTCTCGCTCAGTGATTTTGAGGGAGTGCCTGAGTGCGTAGCCCACACTAGAGTGTCCCAGCGACTACGTACAAGTCTGTTTTGAACTGTTCTGGTTATGGTGTTGCCACACATTGGTGAAGGTCTGACCAGTTTTTCTCTGGACTTGACTCAACACCAATGATCCCCAGCCATCTCTGGCATACCCTCTCATTAAGATGGGAAATGCCTCTGAAACATTTCTGCTTGTGTCCAGAATATCAAAAGACCTTGACTTCCTCATGGGAACTATCTACACCATTTTTGGGATGCTATCGGTGGTGGGAAATGGTATCCTGATGTTTGTGGCCTATAGGAAGAAGTCCTCCCTGAAGCCGGCAGAGTTCTTTGTGGTTAACCTGGCTATCAGTGACCTGGGCATGACCATAACCCTGTTTCCACTGGCTAGCTCCTCAGCCTTTACTCACATgTGGCTGTTTAATGAGAAGACCTGTATTGCCTATGCCTTCTGTGGTGTTTTGTTTGGACTGTGCAGTCTGACCAATCTCACGGTGCTCTCCTGTGTCTGCTGGCTCAAGGTCTGCTGCCCAAACTATGCATCAGGTAACAAGTTCTCCTACTGCCACGCATGCCTTCTGGTTGCTGGGGTCTGGTGCTACGCTGGAATTTTTGCTGTAGGTCCCCTGTCGGGCTGGGGAGAGTACGGGGCCGAGCCTTACGGTACAGCATGCTGCATCAACTGGTATGCTCCAAGACAAGACTCTGCAGCTATGAGTTACATCATCTGCCTCTTCATCTTCTGCTACATTGTGCCCTGCactgtcatctttctgtcctacACATTCATTCTGCTGACCGTCCGGGGCTCCCGCCAGGCAGTGCAGCAGCACATGTCCCCACAGAACAAAATCACCAATGCACAGGCATTTATCATTAAGCTTTCGGTGGCAGTTTGCATTGGTTTCCTGACAGCATGGAGTCCATATGCCATTGTGTCCATGTGGGCAGCATTTGTTAACCCAACAACTGTACCACCCATGGCTTTTGCTCTGGCAGCTATCTTTGCCAAGTCTTCCACCCTTTACAACCCTATTGTCTATCTGGTCTTCAAGCCCAACTTTCGCAAGTCCCTGTGTCGGGATGTGGCCAAGTGCAGGACGACACTCTTTGGATGTCTGTGTCAGGACAGCTCTGCACAGAAGGGAACTTGCAGACAATCCAGTCACAAAGAAGAGTGTAACTCGACAAGGTTCTCAAATGGGCTACCGGAGAACCACGGGACCTGCAGACACTGTCCTTACCCTGAAACAGCTACTGGTACCAGAGAAAACTTTACAGAATACAGCCCCCAGCAGACTGTGAGAATACTTAAAGGATCAATACATAATGAGGTTGCTGTCAGTCAGCTCTCCAATGAGTTGCAGAGTGACTTCCTGTAGAGAATCAAACAAAGTCAGACAATGAGAAGGTAAATAAAAAGAGTAGTGGAGAAAAAGATGGCAAGAATGAAGGTTTAAAGACACTAATTGCAAGGAAAAATggagtgaaagagaaaaagataaTAATTGAATGAAGGAAAAGAGTTTCTAACTTTAAAGGTCAAAGTTTTAAAACTCAAATAGGTGATACTGCCAAAAAAAGGCCAAGAAGTTAGAAGCCAATAAAGGAGGATAAGCGAGCCGAACAGCCAACATGCAACCACAATATTCATCAGGTCAAATTAACACACTTTAATAGCTATCTGATCACTTTGACTGATCAACATTAagcttttatgtatttattacgACTACTGTATTTGATGATGTGTTTAATTTGAAAGGTATTTATCAATGCATGCCTAAAATTAAAGGACAGCTCTGTCTTCTCATTGCTGAGGGTAGATGAATGTCTCAAAGGCCCACTTTGAACATGGACCTCCTATAATTTACCCAGGGTATAGTATTGATACCTCTACAAAGAGGTGTTGCCATGTCAATTTTGTCTAATCAGCTGTGTCCAGGACAGAAGGCATGACTGAATTATAAAAGCAGAAGGATTGGGGCAGTACTAAAGATAATCAAATCTGTAACACCGAAAAAGCTCTATTCTCTCTCAATATACTCTGTGGAGTCCTCTAGACAACAATATTCAAGTTAGCGACACAAAACCTGTTTTAGGATAAATCATAGAATCGGGGAGAACCATCAGGTAAAATAAGctacaaatttaaaatgtgccaaacatatGTTGCATAGGAACATATGCtggatgcagttttttttttcgattgctaaacgaca
>XM_039799291.1
CTGGGGGAGAGAGTGGGAGCTGCAGGCTGTTAGAAACAGAGCGAGAAGGAGAGACCAGCAGCACTAGGCAGCATCACGTCTGTCTCTATCTGTCGTCTATTGGATCTTCCTCAGCACAGCTGTCTGAGTGCTGCTGCCTGCGAGTGGATCCTCTCGCTCAGTGATTTTGAGGGAGTGCCTGAGTGCGTAGCCCACACTAGAGTGTCCCAGCGACTACGTACAAGTCTGTTTTGAACTGTTCTGGTTATGGTGTTGCCACACATTGGTGAAGGTCTGACCAGTTTTTCTCTGGACTTGACTCAACACCAATGATCCCCAGCCATCTCTGGCATACCCTCTCATTAAGATGGGAAATGCCTCTGAAACATTTCTGCTTGTGTCCAGAATATCAAAAGACCTTGACTTCCTCATGGGAACTATCTACACCATTTTTGGGATGCTATCGGTGGTGGGAAATGGTATCCTGATGTTTGTGGCCTATAGGAAGAAGTCCTCCCTGAAGCCGGCAGAGTTCTTTGTGGTTAACCTGGCTATCAGTGACCTGGGCATGACCATAACCCTGTTTCCACTGGCTAGCTCCTCAGCCTTTACTCACATgTGGCTGTTTAATGAGAAGACCTGTATTGCCTATGCCTTCTGTGGTGTTTTGTTTGGACTGTGCAGTCTGACCAATCTCACGGTGCTCTCCTGTGTCTGCTGGCTCAAGGTCTGCTGCCCAAACTATGGTAACAAGTTCTCCTACTGCCACGCATGCCTTCTGGTTGCTGGGGTCTGGTGCTACGCTGGAATTTTTGCTGTAGGTCCCCTGTCGGGCTGGGGAGAGTACGGGGCCGAGCCTTACGGTACAGCATGCTGCATCAACTGGTATGCTCCAAGACAAGACTCTGCAGCTATGAGTTACATCATCTGCCTCTTCATCTTCTGCTACATTGTGCCCTGCactgtcatctttctgtcctacACATTCATTCTGCTGACCGTCCGGGGCTCCCGCCAGGCAGTGCAGCAGCACATGTCCCCACAGAACAAAATCACCAATGCACAGGCATTTATCATTAAGCTTTCGGTGGCAGTTTGCATTGGTTTCCTGACAGCATGGAGTCCATATGCCATTGTGTCCATGTGGGCAGCATTTGTTAACCCAACAACTGTACCACCCATGGCTTTTGCTCTGGCAGCTATCTTTGCCAAGTCTTCCACCCTTTACAACCCTATTGTCTATCTGGTCTTCAAGCCCAACTTTCGCAAGTCCCTGTGTCGGGATGTGGCCAAGTGCAGGACGACACTCTTTGGATGTCTGTGTCAGGACAGCTCTGCACAGAAGGGAACTTGCAGACAATCCAGTCACAAAGAAGAGTGTAACTCGACAAGGTTCTCAAATGGGCTACCGGAGAACCACGGGACCTGCAGACACTGTCCTTACCCTGAAACAGCTACTGGTACCAGAGAAAACTTTACAGAATACAGCCCCCAGCAGACTGTGAGAATACTTAAAGGATCAATACATAATGAGGTTGCTGTCAGTCAGCTCTCCAATGAGTTGCAGAGTGACTTCCTGTAGAGAATCAAACAAAGTCAGACAATGAGAAGGTAAATAAAAAGAGTAGTGGAGAAAAAGATGGCAAGAATGAAGGTTTAAAGACACTAATTGCAAGGAAAAATggagtgaaagagaaaaagataaTAATTGAATGAAGGAAAAGAGTTTCTAACTTTAAAGGTCAAAGTTTTAAAACTCAAATAGGTGATACTGCCAAAAAAAGGCCAAGAAGTTAGAAGCCAATAAAGGAGGATAAGCGAGCCGAACAGCCAACATGCAACCACAATATTCATCAGGTCAAATTAACACACTTTAATAGCTATCTGATCACTTTGACTGATCAACATTAagcttttatgtatttattacgACTACTGTATTTGATGATGTGTTTAATTTGAAAGGTATTTATCAATGCATGCCTAAAATTAAAGGACAGCTCTGTCTTCTCATTGCTGAGGGTAGATGAATGTCTCAAAGGCCCACTTTGAACATGGACCTCCTATAATTTACCCAGGGTATAGTATTGATACCTCTACAAAGAGGTGTTGCCATGTCAATTTTGTCTAATCAGCTGTGTCCAGGACAGAAGGCATGACTGAATTATAAAAGCAGAAGGATTGGGGCAGTACTAAAGATAATCAAATCTGTAACACCGAAAAAGCTCTATTCTCTCTCAATATACTCTGTGGAGTCCTCTAGACAACAATATTCAAGTTAGCGACACAAAACCTGTTTTAGGATAAATCATAGAATCGGGGAGAACCATCAGGTAAAATAAGctacaaatttaaaatgtgccaaacatatGTTGCATAGGAACATATGCtggatgcagttttttttttcgattgctaaacgaca

Function

NR:

description
PREDICTED: opsin-5-like isoform X2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67987 False 457 lncRNA 0.40 1 18299311 18299767
XM_039799290.1 True 2410 mRNA 0.45 7 18255892 18300333
XM_039799291.1 False 2404 mRNA 0.45 6 18255892 18300333

Neighbor

gene id symbol gene type direction distance location
slc9a8 slc9a8 coding upstream 43815 18191887 ~ 18212077 (+)
LOC120559899 emilin3 coding upstream 99773 18140824 ~ 18156119 (+)
aar2 aar2,LOC103372053 coding upstream 190918 18061189 ~ 18064974 (+)
prpf6 prpf6 coding upstream 198526 18039927 ~ 18057366 (+)
si:rp71-79p20.2 slc2a4rg,LOC104941506 coding upstream 424677 17787344 ~ 17831215 (+)
rnf114 rnf114,LOC103364155,LOC104964933,LOC104925098 coding downstream 41377 18341710 ~ 18349313 (+)
mafba mafb,LOC107087611 coding downstream 88284 18388617 ~ 18392479 (+)
zhx3 LOC103366026 coding downstream 321504 18621837 ~ 18634328 (+)
trnaa-ugc_5 NA coding downstream 429147 18729480 ~ 18729551 (+)
snai1b LOC104927488,LOC104965648,LOC103366033 coding downstream 437599 18737932 ~ 18740322 (+)
G50846 NA non-coding upstream 18082 18237518 ~ 18237810 (+)
G50817 NA non-coding upstream 122077 18133442 ~ 18133815 (+)
G50753 NA non-coding upstream 298248 17957198 ~ 17957644 (+)
G50752 NA non-coding upstream 311077 17943712 ~ 17944815 (+)
G50727 zbtb46,LOC104941523,LOC102795869 non-coding upstream 420126 17776402 ~ 17835766 (+)
G50874 NA non-coding downstream 1949 18302282 ~ 18302668 (+)
G50875 NA non-coding downstream 3649 18303982 ~ 18304184 (+)
G50883 NA non-coding downstream 13001 18313334 ~ 18313603 (+)
G50887 NA non-coding downstream 23041 18323374 ~ 18323642 (+)
G50894 NA non-coding downstream 31174 18331507 ~ 18331876 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 469494 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 1058719 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 1261191 16977897 ~ 16994701 (+)
LOC120559923 NA other upstream 1847431 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 1859684 16380044 ~ 16396208 (+)
G50983 LOC103366028 other downstream 381810 18682143 ~ 18686302 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 1156144 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 1467293 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 1696144 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 1763659 20063992 ~ 20065735 (+)

Expression


Co-expression Network