G50895 (spata2)


Basic Information

Item Value
gene id G50895
gene name spata2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18332584 ~ 18337729 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68030
ttcactgATTAACAATTTTGGCTATTTTCCCTTTCCACCCCAATGTATGCCCACATATTGATCGTAAGGTCCATACCCCTTCATATAGATATTGTGCAGTGATCCTCCTTGCCAAGGTGGAAGGGGTGGGAAGGGACAGTGGGTGAGGGTCAAGGGAGAAGAAGTATGGGTTTGGGCCTTGTACAGAGCATGCCAAGAACGGGTTGGGGGAAATAGGGAACGGTAAAGGGGCTGCCTAACTACACCACCACTGTTAACATCAGTAAGATAACCACACAAAGAGGTAAAGGGAGTATTGACTTCCACAATGACTTGAGTGTGTCCGGTGTGGGTTAAACCAATCATGTTCAAATGGCTCAATGTATTccatgacacaaaaaaaaaaaaatagctctTTGTTTTTTCCAACATCAGTAATTCACATCCACTGATGAATGTAAAGTCAGCTCCACATTAGATATTCACCTACTTTATGACAAGGCGGTTGTTCACTAAAAGATTAAAACAGTGCCCACAAACTTAGCAGCAGCCCTGAAGACTGTTTAGCCCTTTGTAGTGACCTACACAAATTATCAGTCCACTGATCAGAGTAAAAATCCACGTTCCATGGTGTGCGAGTAGGTATCTATGTTGATGATTCTCTTTCTAGGCTTCTTAAAAAGGCCCAAATCTACGGACACAAGGCTAAACTTTAGCAAAACCACAGATTTATCTTACATGAACTGTACATCCGGGGACGCAACAGGATTTCGTTTTCGACTCCAATAAGATATTTGTTCTTCATTTGGCAATATGATCACTCTTGCAACCTGGCTCGATACTTCTAAAACTCGTCTTTGTTGCTGGTATGATTTGCGATAAACAAGACGTGcaattgaaatatatatatatatatatatatatgataaatATTCAAACTATTTAGAAAGGCTTCATAAGATGAAAAGAAAGCAATTGCACACCTCCCCTAAGGTCACTCAAGATTTTTGTGATACCCAAGTTAGCTAACCTTGACCCAAAAACATCTCTCAAAAGAACCCTTAAGGTAGATCCAAACGGTATCAAAAGATCCCTTTTTCATGTTGTTAACATTACGAAGACACAGAACtccattttaaaaaggaaagaaatgaaCAGAAGTATAACATCACTCCCTGTAACCAACCATGTGTTCAGGTAATATCTCTGAAAACAGACATTAACCCCAGCAAgcacgttgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtatgtatgtatgtatgtatgtatgtatgtatgtgtgtatgtatgtgtgtgtgtgtatacacaaAGTGTGAATTGCTGCATAATTCTGTTAATATGCATGGTTCAATATGCTTCGTCTTAAGACACTGCGTTTTAAGTAATCCAtacttgtgtgtttttgaattACTCCGATTTCCTTCCTTAGCGGTCATAGATCTAGCTGTGCATTTAGTTCATGTCGGCTGGTAAAACACAAAACCATGTCAATGACAACAGTGGAAACTTAAAATACTCGATAAGACAGCTGAATGAGCTTAAGGCATTTAGAGGTTATTCCTGACAGAACATTAAGGCTACGGTGGCCTAAACGGTCTGTCAAAATAACCCAGACTCAGACtttttttgaatgaaatgtgatttaaaattaGCCCTTGGTGACTCTCAGCTTCAAAATACAGCATGAATTATCCCAATATAGAACCAAAGCCTAACCACTAAAGATACCTTCCAAATTTAAGACACTCAGTTAACATGTTAGCAGAGTTTATTCACCCATGATGACCCCACCCCTTTGAAGTATATTAATAAAAGAGTTTAATGAAATGTCCACAGCAAACGGCAGTGGCTTGCTTGAGGAAACGCCTGCTAACCTCATGCACCAAATTTACCTAAAACAAGGGGCTTAGAGAGGGCTTTCGGGGtcttaaaatatgaaaaataacacTACACATTGGCAATTGCTGTGCTGTACAAGAGGGTAGACACAGCAACATGAATCCCTGTTATAATTTAGTGCAATAGTCATGTGATAAATACTACCTTTGCAAAGCTAAAATGTTAAATGGTATTAACTCGTGTCAGAGAGGCGTAGATTCAACTCTAAAGTAATTTTTGAGTCCTCAGTCTGTTGTGGTGTTGTCTTGAATTGCAACATATTATAAGTGGTTTCTGTCTTTTGTccatgggaaaaaaaaacagagaaaacttATAGTGCAATGCATTTCAATGCACTTTCACAAAATACAGGCTCAAAAGTGACCAATAAACTAAATAGCACCTCTCTGACCATTTCAAGCAACCATAACAGTTAAAGCTTCACAAGTTGCAGGGCTATTGTATTGAATTGCATTATGATTTACAAatgttcatgtttttatgtccactCCATACAGAAACTGTAAACGGCTGCAAGACAGAAAACCTTGTGCTATGTCATTCAGATGAAAAAGCCAAGGATTATCTCACAAGATAAATAACCTCTGCTAACCTTTAAAAGTGACTAAATAGGCTGATagtaaaatatgttttctaTTCAGCTAAAACACCAGTCGGGCTAGTTTGAAACCACAATGTCAAACAGGGTGTATAAGCTGAAGCCATTTGAGGTAGACAGAAACCGTGTCAGAGTATACACTTTCATACTGTCTAAAACCAATCAATAGGCTCACACACTGTCAAAAAACCGTAATCACTTGATTTGTGGCCCAGCTTGAGACTTTCTGTGACTGACAGGGAATGACTGATCTGGTAAGGGTGCACTTCAACATCATGGACCATGGGGGCTTAAGGAGTGTAATGAAAGGGAATGGGGTGCTTGGAACTGACACAACTCAACAGGCTATTTACCAGAAAGAAGTCAACGCCACACATCTTCAAGTCAACAGCAGCATTTAAACCTCAGTCATATCACCAGAAACAATTGAGGGTTAATTTACAAGGCATAATCTTTTAAATAGAATATATGGCATCTAACCATTGTCTCAATATGTCCCTTTGAGATATCATCCACCCGAGCCCGCGGACATAAGTTTATACCCCAAAACTCCCAATGCCAGACCTCATGCCCATTTAACAGTCTCACATTGTTCTAGAGAATAGAGATTAAAAATATATACTATTGACTAATTGACTTCCAGTGTTATGTTTTCTCCTACTATTTTTCAAGTTTAAAAAGATCTCCTGTGTCAGTATGCAAGCTCAGAGGTCTTttctacatacatacacacactcactcactctctctctcacacacacacacacacacacacacacacatatatatactgtatatatatatatatatatatatttatatattagagGAATTTTTAGCTGAGAAGTTAGGCAAAGTATATATGTTCATTTGGACATAATTCATTCAAAATGAGAAGGAATTAAACTATCTTCTTCAGTTTCCCTTTTGAGGAGGACAAAATTTAAGGAATTGGGGAAGCGCTACAACATCACATGACTACTCAAGAGCAGGTAGCAaggtaaaaagaagaagaaatagatAAAAGGCCTGAACTTGTACAAGGCAGAGAGATGGACAGACGATATTGCTCTCTGTGGCAAGTGCATTCCAGGGCCCTACTGACTGTAAGAGAAAATGTACAAAGTTCAAGAGAGGGTTCCATAGGGCCAAAAGACCATCAGTTAAGGGGAAGATAGTGAATGAGTTATTTAAACCGGAACAGAGCTAAAGCAATAGTGCAAGACTATGCAGCAGGTTAAGGGAGGGGAATAGAAGGGAGAAACAAATATTTTGATCCATGCCTGATTCATCGGTACACCAGGTGAGATATGGTGCCAGATTTGAAGTTGAGCTGATGGTTGGGCACAAAGCTGTGTTGGGGATTTTTTCGCGTGCAAATATCTTTTGCATACAAGCCCATGCATGAGTCACATGACACCTTAGAGCAGTTCACACAGGTGTGGGATGCCCCTGGCTTGTTGCAAAACCCGCATCGCGATCCCCCCATGCTTATTCGCTCAGTGCTGCCTCCCTTTGGGGTGGTCAAGGCAATAGACTTGCTTGCAAACAGCTTTGTGGACATGAGGGGTTTCTCCACCatctgggggtgggggtgggggtgagaGTGTGAGTGGGTCAGTGTGAGGGGGTGCGGATGGAGATGGGAGTGGGAGTGAGTGTTAGAGTAGACTGAGAGCTTTTCCTTAACAGGAATGTATCCATCGAGGGGTCGTGGGGATTTTGGGTGGTAGTCCTGGAGGCCGCAACAAGGGGAGGGGTCCACATCATGACAGGCAGAACAGAGGATCATGTCACATCTCTGGCAGGAGGCCATAGAGGAGCAGCCAAGCCCACAGCCCTGACACTTCACACTACCATGAGGTTTGAGTAGCCACCCATCCCTTACATCCCGAGGCTCTCTGGATGGAGGTCGCGAGGGGGTCTGCCTTCCTCCTGTCCCAACACCCCTCTCTGTGTACAAGTCAATCTCATCCAAAGAAGACAGGTGGTAGGATGTGTAAGCATCGGCCAGGGGAGGCGACTGAATTGGAAAGAAATCCGCAATAGGGCTATAGGAAGGCGGAGCTGCCACAGAGAACAGAGATGCTGAGGTACTGGGCCTGATGATCTCATCCTTCATATCCTCCTCCGCATCCACAAACAGAGGCTCCTTCCTCAGACTCAATGAGGCCTTCAAGACAGGCTTGCTAACTGCTGCGTGCCAGTGACCAGCCCCATCTGTAACATCCACAGACTTAGACGGTCGGCTACCTCGCCTCAGGTGGTGGGCATGAGGCCTCTCTATATCTAACGGCCGCACAGACAGCCGAGCCATATCTGCCCCAAGGCTGTCGCGTCTGCGGAGCGCCTCAGCACAGCCAGCTGCATCATCCCTGCAGCCTCTTCGGAGTTCCAGGGCCTCCAGCTCTGAAGCCGAACCACGGGCCAGAGCCACTACTTCTCTCAGAAGACGACACTCTGCCTGGGCCAGGAAGAGCTCAAACGCCAACTGCCGGAGATGATTTGTGCCTCCTGGGTGCTCCTGCAAATGGAACTGCGAATCATGGTCACAGGCATAGCCAATGGTGCGCATAAGAGTTCGGAGTTCAGCATCACAAATGGCAGACTGCAGATGGTACACA

Function

symbol description
spata2 Predicted to be involved in several processes, including protein deubiquitination; regulation of necroptotic process; and regulation of tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within programmed cell death. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including brain; digestive system; head; otic vesicle; and pleuroperitoneal region. Orthologous to human SPATA2 (spermatogenesis associated 2).

NR:

description
PREDICTED: spermatogenesis-associated protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68030 True 5124 lncRNA 0.43 2 18332584 18337729

Neighbor

gene id symbol gene type direction distance location
slc9a8 slc9a8 coding upstream 120507 18191887 ~ 18212077 (+)
LOC120559899 emilin3 coding upstream 176465 18140824 ~ 18156119 (+)
aar2 aar2,LOC103372053 coding upstream 267610 18061189 ~ 18064974 (+)
prpf6 prpf6 coding upstream 275218 18039927 ~ 18057366 (+)
si:rp71-79p20.2 slc2a4rg,LOC104941506 coding upstream 501369 17787344 ~ 17831215 (+)
rnf114 rnf114,LOC103364155,LOC104964933,LOC104925098 coding downstream 3981 18341710 ~ 18349313 (+)
mafba mafb,LOC107087611 coding downstream 50888 18388617 ~ 18392479 (+)
zhx3 LOC103366026 coding downstream 284108 18621837 ~ 18634328 (+)
trnaa-ugc_5 NA coding downstream 391751 18729480 ~ 18729551 (+)
snai1b LOC104927488,LOC104965648,LOC103366033 coding downstream 400203 18737932 ~ 18740322 (+)
G50894 NA non-coding upstream 708 18331507 ~ 18331876 (+)
G50887 NA non-coding upstream 8942 18323374 ~ 18323642 (+)
G50883 NA non-coding upstream 18981 18313334 ~ 18313603 (+)
G50875 NA non-coding upstream 28400 18303982 ~ 18304184 (+)
G50874 NA non-coding upstream 29916 18302282 ~ 18302668 (+)
G50902 NA non-coding downstream 30292 18368021 ~ 18368329 (+)
LOC120559505 NA non-coding downstream 58039 18395768 ~ 18415632 (+)
G50944 NA non-coding downstream 166738 18504467 ~ 18505027 (+)
G50962 NA non-coding downstream 296737 18634466 ~ 18635232 (+)
G50964 plcg1 non-coding downstream 298872 18636601 ~ 18640180 (+)
opn7b LOC103364157,LOC103467481 other upstream 32251 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 546186 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 1135411 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 1337883 16977897 ~ 16994701 (+)
LOC120559923 NA other upstream 1924123 16397669 ~ 16408461 (+)
G50983 LOC103366028 other downstream 344414 18682143 ~ 18686302 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 1118748 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 1429897 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 1658748 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 1726263 20063992 ~ 20065735 (+)

Expression


Co-expression Network