G50994 (ncoa6,LOC105926085)


Basic Information

Item Value
gene id G50994
gene name ncoa6,LOC105926085
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18686786 ~ 18688293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68147
AAAGCAGTAGAAAATTTAATTCAGTTTTACAACATAATTATACAATCATGGCAAACTCCATTATCAGTCTTCACGATTAATCCAGCATTTAATATAAAAAGCACATTCCCACAAACACATACGCTATTGCACACATTCTAACTACAATCTCACATAATAGCATTGACAAAACAATAGCATAATTCTTTTTAAAACAATCTGTACATGGTTTCTTCCTCCATTGAAAATTCATAATCTGGGACAGAGAAACCAATATCAACTGATTCACAGCaggaaacaaaaaacatttacagtacagtTCATAGGTTGCCACAACTGGAGTTGTGCCTATTTCGACTTCCTTCGTTTGGCCTGGGTGGGGCTTGCTCCAGTTTCTTTTACAGCAGCACTGGTGCCAGGCCTGGCTGATCTCTTCCTAATGCCGCTGTCTGCTACTGgctcttcctccacctccttcTCTGCCCGGGAGCTGCGTCTGCTCGGTCCCTTGGGCTTCTCCACAGCAGCCCTTGGGACTAAGTTGATGGGcgtctttcttttctttgcccATCCCTGCTCAGAACCTGTCAAGACCTCTTCACCTGAACAGGACAAAAACAAGAGTTAATGTTATGCCACCTAGTCCCAAGTAGCTCATATAAGATAATATGGAATTGTtctatttaatattaaatacacataataagcgttttttt

Function

symbol description
ncoa6 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone methyltransferase complex and transcription regulator complex. Human ortholog(s) of this gene implicated in breast cancer; colon cancer; and lung cancer. Orthologous to human NCOA6 (nuclear receptor coactivator 6).

NR:

description
PREDICTED: nuclear receptor coactivator 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68147 True 695 lncRNA 0.41 4 18686786 18688293

Neighbor

gene id symbol gene type direction distance location
zhx3 LOC103366026 coding upstream 52458 18621837 ~ 18634328 (+)
mafba mafb,LOC107087611 coding upstream 294307 18388617 ~ 18392479 (+)
rnf114 rnf114,LOC103364155,LOC104964933,LOC104925098 coding upstream 337473 18341710 ~ 18349313 (+)
slc9a8 slc9a8 coding upstream 474709 18191887 ~ 18212077 (+)
LOC120559899 emilin3 coding upstream 530667 18140824 ~ 18156119 (+)
trnaa-ugc_5 NA coding downstream 41187 18729480 ~ 18729551 (+)
snai1b LOC104927488,LOC104965648,LOC103366033 coding downstream 49639 18737932 ~ 18740322 (+)
LOC120559184 NA coding downstream 70643 18758936 ~ 18775522 (+)
si:ch211-117c9.2 LOC103370868 coding downstream 153892 18842185 ~ 18855337 (+)
LOC120558626 LOC108235173,LOC104963598,LOC102083184 coding downstream 195103 18883396 ~ 18885589 (+)
G50964 plcg1 non-coding upstream 46606 18636601 ~ 18640180 (+)
G50962 NA non-coding upstream 51554 18634466 ~ 18635232 (+)
G50944 NA non-coding upstream 181759 18504467 ~ 18505027 (+)
LOC120559505 NA non-coding upstream 271154 18395768 ~ 18415632 (+)
G50902 NA non-coding upstream 318457 18368021 ~ 18368329 (+)
G51017 NA non-coding downstream 69751 18758044 ~ 18758397 (+)
LOC120559607 NA non-coding downstream 146987 18835280 ~ 18837431 (+)
G51028 NA non-coding downstream 167074 18855367 ~ 18856526 (+)
G51155 NA non-coding downstream 751394 19439687 ~ 19441326 (+)
G51165 LOC103362816 non-coding downstream 882900 19571193 ~ 19608956 (+)
G50983 LOC103366028 other upstream 484 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 386453 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 900388 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 1489613 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 1692085 16977897 ~ 16994701 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 768184 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 1079333 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 1308184 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 1375699 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 1757678 20445971 ~ 20532569 (+)

Expression


Co-expression Network