LOC120558947 (lrtm1,LOC102799284)


Basic Information

Item Value
gene id LOC120558947
gene name lrtm1,LOC102799284
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19456477 ~ 19463712 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68363
ATGGGCATCCTCCGAATGTGTTCACTCTGTGTTGAAGTGTTTTGAGTATTTGTGTATTTGACATACCGCAATCCAGATCTAATTTTGTCTTGTTCAACTCTTGCCAGAGCAATAGGAGATAACGTAAATGTCAGCgcatgtgtgtgcgctgtgATTTAAGAGGAGCAGCTGTCTGCTGGGAGAGGACACGCCATCACATTCCCCCAATCATGGATTCAATAGAggagcagaaaaaaaatcaaatcaagcaAGAGAGAAGGGAAAATAGCAACCAACAGCATGAAGAAGAAtacaagagacagaaagagaggttGAGAGGCAGTGAGAGAGCTACAGAGGTATAGagcgatagagagagatagaaagagagagaaagagagagagaggaagagctcCCTAACTCCAGTGATTCCCAGACTGGCTAGCAGTAAGCTCTGTGCTCTGATCTGCCTGCTCTGATGGGGTTTCATGCCCGTGCAGGCAGTGTTGGGGATCCTGAAGGCAACACAGGTTCCTGCTGCTGATCTCAGCCTCTTATTCCTACCTATTGACCATATCAGCCTACACAGATGAGAGTCTGGACAGCTAATCTTAACCTACTACCGGTGGCTAATGGATCATCAACCAGTGACAGTCACTAGTATCCAAAAAGGGAGTTAAAAGAAGATCGAATGCAAGTGGCCCAAGGACGACTGGCAGATATGAGAGTGGTACTGGTGTGtgccctcctctccctcctctctttgtCACATGCCTGTCCAAAGGAGTGTAGCTGCAACAGCAATACCAAAGTAGTAGACTGCCGGGGTCGAGGCCTATATGACATCCCCCGACGACTGCATCCGGACACCCAAGAACTTTATCTCCAAGATAACCGTATCAGGGGGCTGGGATCAATGGCTTTCCGAGAAATACCACTTGTCCGAATTCTCGATCTATCTAATAACTCTATAACATCTGTTTCACCGACTGCGCTGCTGGGTCTCAGAACTCTACAGCGCCTCAGCCTGGCCTACAACAGCTTAAGAGAGCTTGACAAGCGGTTGCTTGGGCCTATCCGCTCGCTTTCACACCTGGACCTCTCACACAACAGCCTGTGGGGTTTGCCTGGAGCCATGGGGGACAGTTTGAGGAACCTTAGCCACCTGGGGCTAGCATACAACAGGCTAACACGATTGGACCGCTCCCTGTTGGAGGTCCTGACCCGCCTGGACAGCCTCACACTACGAAGCAACCCCTGGAGGTGTGACTGCCAGCTCATAGGCCTCAAACTCTGGCTGGAGTCCTACCTCTTTAAAGGTGGAGTGGTGGAC
>XM_039800317.1
AGCATGCCACAGCAATGGGCATCCTCCGAATGTGTTCACTCTGTGTTGAAGTGTTTTGAGTATTTGTGTATTTGACATACCGCAATCCAGATCTAATTTTGTCTTGTTCAACTCTTGCCAGAGCAATAGGAGATAACGTAAATGTCAGCgcatgtgtgtgcgctgtgATTTAAGAGGAGCAGCTGTCTGCTGGGAGAGGACACGCCATCACATTCCCCCAATCATGGATTCAATAGAggagcagaaaaaaaatcaaatcaagcaAGAGAGAAGGGAAAATAGCAACCAACAGCATGAAGAAGAAtacaagagacagaaagagaggttGAGAGGCAGTGAGAGAGCTACAGAGGTATAGagcgatagagagagatagaaagagagagaaagagagagagaggaagagctcCCTAACTCCAGTGATTCCCAGACTGGCTAGCAGTAAGCTCTGTGCTCTGATCTGCCTGCTCTGATGGGGTTTCATGCCCGTGCAGGCAGTGTTGGGGATCCTGAAGGCAACACAGGTTCCTGCTGCTGATCTCAGCCTCTTATTCCTACCTATTGACCATATCAGCCTACACAGATGAGAGTCTGGACAGCTAATCTTAACCTACTACCGGTGGCTAATGGATCATCAACCAGTGACAGTCACTAGTATCCAAAAAGGGAGTTAAAAGAAGATCGAATGCAAGTGGCCCAAGGACGACTGGCAGATATGAGAGTGGTACTGGTGTGtgccctcctctccctcctctctttgtCACATGCCTGTCCAAAGGAGTGTAGCTGCAACAGCAATACCAAAGTAGTAGACTGCCGGGGTCGAGGCCTATATGACATCCCCCGACGACTGCATCCGGACACCCAAGAACTTTATCTCCAAGATAACCGTATCAGGGGGCTGGGATCAATGGCTTTCCGAGAAATACCACTTGTCCGAATTCTCGATCTATCTAATAACTCTATAACATCTGTTTCACCGACTGCGCTGCTGGGTCTCAGAACTCTACAGCGCCTCAGCCTGGCCTACAACAGCTTAAGAGAGCTTGACAAGCGGTTGCTTGGGCCTATCCGCTCGCTTTCACACCTGGACCTCTCACACAACAGCCTGTGGGGTTTGCCTGGAGCCATGGGGGACAGTTTGAGGAACCTTAGCCACCTGGGGCTAGCATACAACAGGCTAACACGATTGGACCGCTCCCTGTTGGAGGTCCTGACCCGCCTGGACAGCCTCACACTACGAAGCAACCCCTGGAGGTGTGACTGCCAGCTCATAGGCCTCAAACTCTGGCTGGAGTCCTACCTCTTTAAAGGTGGAGTGGTGGACCccaaaaaaagagggaaaagacCGAGAAGATTGCTTACTACTTTCCAACgccagaaagggagagagaaagacagaaaaaaacctAACCTTTTTCCCCGCATGACCACAAGCTACCATTACCTGTTCGCTAACATACACCACCTGGAGTCTGAGAGGCTACTGCGAGGCCACACCCATGGCAACCATGCTCATCCCTCTAGCCACGCTATCCATGTCCCCATGGCAATGGGGGAGGGTTAtggtggtgggggaggaggcggaggaggaggagggggtttGCCAGAGTGTGAACCTAAGCAGAGGCATCGGCCTGTCAACTTGCGCCACGCAATTGCCACAGTGATCATCACCGGCGTAGTGTGTGGGATTGTGTGTCTGATGATGCTGGCTGCAGCAGTGTACGGCTGCGCCTACGCCGCTATCATGGCCAAATATCAGCGGGAGCTTAAGAAGAACGAGGAGTTGGCAGCAGCTAAGGGGGCAGATCATGCCATAGCAGATGAGAAGGAACCACTGGAGAATGCTATCGCCTAGGAGGTGATAACATGAACCCTGGACTTAAAACCTGGGCCTCAACCCTTTAACCTAATCCAGAGTGGATTGATGTGTGTGCTAGTGCATGtgtgagaaaaaagaagagaatgAGATTCTTTatgtgtgggcgtgtgtgtgctCACCTCCTACCGAGACTTGGGTAGCTAAACTCCACAGGTATTTGACTATGCACTGATGAGAAGAGTATCTTCTGCTGTATGCGGGTTCGAGGGGCAGGCCAAAGAATCCAAAAGGAATCAATTCCATTTTATCTAAAAAATGCATATCACAGATAGGAACAAATTGCTATATATTTATAATTGTGTATTTGTAGGTATGATAGTAAAGCTCTGGTATTTAAAAACAATGGATTTCagaatttgttgtattttagttgTTGTTCATAATTTGGAGTCTGATTTTGAGGTAATTTTGCAAAAACTTATAGTAGGCAGCTGCTGTCCATTAAGTTTTGTTCTAAGTTGTTTGTATCATTAACGTGAGAGTAAGAGAATGAGAGTGTTTGTGTCAGTGTTTTTGCTTGAGTGTGCGTGTGGAGATGTATACTGTAGGCACATATTTATAGAGAATATAAGAGTCTGTGCCTAATAACGTGATATAGTTTTAAGGAAGAAATTTGTTTTCTTAAAGGATATTTTTCTGACAACTGAAGTGAAGATGGGGAATTCATTGAAGCAATAATGAAACAAACTAAAACGAAAACAACCACAAAACCTGGACGCCATGTTGTTTTTCTATGACCTCAGAGGTTCATGGGTTTGAATTTTTAGATCTACAGTTTTTGAGATCAGTTGAGTCTTGTTTGTGAGTTAATGCTGATCACATAATGGTAGTCATGTCATTTAGtatgtattatattaaaaaaagggaaacatTTGACCTGATTACTATTTGTCTACTGGCAAATAATTTAAGAAGGCAAGTATCCTTAATTGGAGAAAGTATCTTTACAAAAGGAGTATCTTTGGTGGAGATTCTACTGTTTTCTGTATGTCTCTTTGTTTCACTAattgttttgaaaaataaaataactgaaCACAATA

Function

symbol description
lrtm1 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: leucine-rich repeat and transmembrane domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68363 False 1313 TUCP 0.50 4 19456491 19462114
XM_039800317.1 True 2925 mRNA 0.45 4 19456477 19463712

Neighbor

gene id symbol gene type direction distance location
wnt5a wnt5a,LOC103367232,LOC102799772 coding upstream 41287 19366783 ~ 19415190 (+)
LOC120559318 NA coding upstream 128923 19241532 ~ 19327554 (+)
tlr9 NA coding upstream 215868 19235549 ~ 19240609 (+)
apeh NA coding upstream 221091 19225260 ~ 19235386 (+)
LOC120559315 LOC103367228,LOC104955723 coding upstream 235542 19205219 ~ 19220935 (+)
LOC120558919 LOC104941542 coding downstream 328468 19792180 ~ 19793225 (+)
LOC120558889 LOC104931868,LOC102202682,LOC102797917,LOC108235291 coding downstream 455682 19919394 ~ 19925436 (+)
kcna2b LOC104931876,LOC104941545,LOC103149635,LOC106925543,LOC107087053 coding downstream 478312 19942024 ~ 19951021 (+)
LOC120558887 LOC103360394,LOC100692715,LOC101485468,LOC102788976 coding downstream 509491 19973203 ~ 19976195 (+)
ube2t ube2t coding downstream 537437 20001149 ~ 20004112 (+)
G51155 NA non-coding upstream 15151 19439687 ~ 19441326 (+)
G51028 NA non-coding upstream 599951 18855367 ~ 18856526 (+)
LOC120559607 NA non-coding upstream 619046 18835280 ~ 18837431 (+)
G51017 NA non-coding upstream 698080 18758044 ~ 18758397 (+)
G50994 ncoa6,LOC105926085 non-coding upstream 768184 18686786 ~ 18688293 (+)
G51165 LOC103362816 non-coding downstream 107481 19571193 ~ 19608956 (+)
G51167 LOC101075728,LOC104965662 non-coding downstream 124523 19588235 ~ 19590976 (+)
G51168 LOC102792445,LOC100695140,LOC103362820,LOC104933206,LOC101467308 non-coding downstream 127756 19591468 ~ 19593624 (+)
G51174 bgn non-coding downstream 153403 19617115 ~ 19618210 (+)
G51178 bgn non-coding downstream 156729 19620441 ~ 19624994 (+)
G50983 LOC103366028 other upstream 770175 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 1156144 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1670079 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 2259304 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 2461776 16977897 ~ 16994701 (+)
LOC120558920 LOC104941542 other downstream 303914 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 532765 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 600280 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 982259 20445971 ~ 20532569 (+)
G51716 NA other downstream 1825876 21289588 ~ 21290962 (+)

Expression


Co-expression Network