G51206 (uba1)


Basic Information

Item Value
gene id G51206
gene name uba1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19702097 ~ 19707500 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68423
ACCTCTTTGGGCCAGACCAGAAGGGGGCACCAGAGCTGGTGAGCTGAAAAAGCcacaaataataaattaatactTAAAGATACCTGAAATGCAGTGTGTGCCCTCGGTTTGTTTTCCTGGAGACCGGAGGGTGGGAGGTGGGAGAGGGTTCCTGATtttgttcaattgtgtttgtatgttcaaaaacaaaaagatccCTGAAATGCAAAACCTTATCAGCTGGGGTTGGAAATAATGGTTACATAACAAGTCTTATTAATTATGACAATTTCATTAATTACATTGCAAGCCTTTAATTAGATAGCATTAATAGAGAAATGACTTCAGTCAGACCAGATCGGGGCATTTTGGTTCATGTTcagtgtagtctcgcattgccagacctatcgcCACAGCACTGTGATGGGTCCGgCTGATCTGGGGGGAAGTTGTGCAGGAGCTGGCGGATGTTGTTGCTGTATTGGCACTGCCAGTGGTTGCGTGCCCAGGCTACACAGTCAGCCCAGCTGTGGGGGCAGTCTGTGACGAGACTTTTGTAAACCGCCTCCAGCACCTCCACAGGCTGAGCTCCAGGGAGCTTCAGAGTACGCTCCATGAATTTAGGATCTGAGAGGTACTGCATGGCGTTCTCTGGTGGTTGTTTGAATAGTCCCTCAAACTCATCGCGGGCCCACTGCAGTGTGTGTTCAATGGCATTTGGGAAGTTCTTGAGGGTACAGATGGGGATGGACTTCTCAGGTGGGTCTTGGCTGGAGCTGTACGACTCTGTGAGGAAGGGGATCACAACCTGGACATTGCCTTTGGTACCCAGAGTACCAGACTCCAGTAAGGGTTTGCGGTAGTACACACACCTCCGATCCATGTACATACGTGCATCAACATTGTCCAGTGCATTTGTCACTCCATCAAGGCTTTCAAAGAAGTCGTCATTGTACACCCTCTCGGTGTCAGGGCCCACCCTGTTCTGGTGACCGGTGATCCTGATGGAGGGGTTCATCTGCTTTACTGCAGCGGCAGCTGTGTCACTCTTCATTTTCTATTACCACAGACATACAAATGATATCAATAGTGACCTTTTCCttttgatgaaattcaaacaaTATTGCACCTGACCAGCAAAAAACCGCTACAGTGGTCATAGTTGATTACTTGACTGATTTGTGGTCCACACAAAAATACTCTACTCTAATTTCTGTGCACGATGTGTAGTCTTTTATAATGAAGGCCCCACCAATAagcaggcatgaaaacgggtcaggggtgaaaaaggtgagaaggatattacccctcta
>TU68425
ATGGCAATGTTTTGAGTCCATGTGAAAAAGGAGAAGCAAGCATTCCAAGTCAACTGTGATATTCATCATGCAGTGAGTTTGATATGTACCTGATCTGGGGGGAAGTTGTGCAGGAGCTGGCGGATGTTGTTGCTGTATTGGCACTGCCAGTGGTTGCGTGCCCAGGCTACACAGTCAGCCCAGCTGTGGGGGCAGTCTGTGACGAGACTTTTGTAAACCGCCTCCAGCACCTCCACAGGCTGAGCTCCAGGGAGCTTCAGAGTACGCTCCATGAATTTAGGATCTGAGAGGTACTGCATGGCGTTCTCTGGTGGTTGTTTGAATAGTCCCTCAAACTCATCGCGGGCCCACTGCAGTGTGTGTTCAATGGCATTTGGGAAGTTCTTGAGGGTACAGATGGGGATGGACTTCTCAGGTGGGTCTTGGCTGGAGCTGTACGACTCTGTGAGGAAGGGGATCACAACCTGGACATTGCCTTTGGTACCCAGAGTACCAGACTCCAGTAAGGGTTTGCGGTAGTACACACACCTCCGATCCATGTACATACGTGCATCAACATTGTCCAGTGCATTTGTCACTCCATCAAGGCTTTCAAAGAAGTCGTCATTGTACACCCTCTCGGTGTCAGGGCCCACCCTGTTCTGGTGACCGGTGATCCTGATGGAGGGGTTCATCTGCTTTACTGCAGCGGCAGCTGTGTCACTCTTCATTTTCGTAACGTCTGAGGGTCTGAAGAGGAACTGTCTGTTGAGGTTGGACTTCTCTATGGTGTCCATGTCTGTCACAATGACCTCTCCCTCCCCGCCTGCCAGTCCAATCATGGCAAAGTTTTTCAACAGCTCGCAGCCAATGGCACCAGCTCCGACCTGGAATAATAAAAGCCTTTCAGTGAGTAAAGCTCTCCAAGTCCATTGACACCATTTAATAACCACCATCCATTTACAGTGCTCAGTAGAGAAATCCAAGTAGTATACCAGTGTTTCCCCctcatgctgctgctgcataaATTAGTGTACATACAGAATTCAACAAAATAGTTTGTTTCTACTGAAGGTGCA

Function

symbol description
uba1 Predicted to enable ubiquitin activating enzyme activity. Acts upstream of or within axonogenesis. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in VEXAS syndrome and X-linked spinal muscular atrophy 2. Orthologous to human UBA1 (ubiquitin like modifier activating enzyme 1).

NR:

description
PREDICTED: ubiquitin-like modifier-activating enzyme 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68423 True 1292 lncRNA 0.47 5 19702097 19704637
TU68425 False 1058 lncRNA 0.50 5 19702830 19707500

Neighbor

gene id symbol gene type direction distance location
wnt5a wnt5a,LOC103367232,LOC102799772 coding upstream 286907 19366783 ~ 19415190 (+)
LOC120559318 NA coding upstream 374543 19241532 ~ 19327554 (+)
tlr9 NA coding upstream 461488 19235549 ~ 19240609 (+)
apeh NA coding upstream 466711 19225260 ~ 19235386 (+)
LOC120559315 LOC103367228,LOC104955723 coding upstream 481162 19205219 ~ 19220935 (+)
LOC120558919 LOC104941542 coding downstream 84680 19792180 ~ 19793225 (+)
LOC120558889 LOC104931868,LOC102202682,LOC102797917,LOC108235291 coding downstream 211894 19919394 ~ 19925436 (+)
kcna2b LOC104931876,LOC104941545,LOC103149635,LOC106925543,LOC107087053 coding downstream 234524 19942024 ~ 19951021 (+)
LOC120558887 LOC103360394,LOC100692715,LOC101485468,LOC102788976 coding downstream 265703 19973203 ~ 19976195 (+)
ube2t ube2t coding downstream 293649 20001149 ~ 20004112 (+)
G51201 NA non-coding upstream 13389 19688459 ~ 19688708 (+)
G51200 NA non-coding upstream 14669 19687018 ~ 19687428 (+)
G51184 LOC100696538,LOC103362809,LOC108265463,LOC108411640,LOC105006799 non-coding upstream 15263 19681858 ~ 19686834 (+)
G51198 LOC104956301,LOC100694066,LOC101464052,LOC102311528,LOC102199933 non-coding upstream 16480 19684527 ~ 19685617 (+)
G51183 NA non-coding upstream 20330 19679498 ~ 19681767 (+)
G51212 NA non-coding downstream 5266 19712766 ~ 19714679 (+)
G51215 NA non-coding downstream 9272 19716772 ~ 19719437 (+)
G51218 NA non-coding downstream 54677 19762177 ~ 19762479 (+)
G51220 LOC105935863,LOC107390966,LOC108235152 non-coding downstream 61575 19769075 ~ 19801577 (+)
G51221 NA non-coding downstream 70568 19778068 ~ 19805293 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 238385 19456477 ~ 19463712 (+)
G50983 LOC103366028 other upstream 1015795 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 1401764 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1915699 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 2504924 17185911 ~ 17197173 (+)
LOC120558920 LOC104941542 other downstream 60126 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 288977 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 356492 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 738471 20445971 ~ 20532569 (+)
G51716 NA other downstream 1582088 21289588 ~ 21290962 (+)

Expression


Co-expression Network