LOC120558920 (LOC104941542)


Basic Information

Item Value
gene id LOC120558920
gene name LOC104941542
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19767626 ~ 19768564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68439
GCTGCTGTGTGCATTGATGCATGGAGCGGTGTGTGCCTGTATGCTGAAGAATCACACCATATGGATTGAGAGGCACGACTGTGGCCAGTGTGTGGCCATCAACACTACCATCTGCAGCGGCTACTGTTACACACAGGACACCAATTTGAGGGGACGGCTTGGGAGGAGTTTCCTGATCCAGCGCAGCTGTGTGCCTCTGTCCTTGGTGTACCGAGCTGCCCATGTGCCAGGCTGCCCTCAGGATGTCAGCCCTCAGCTGTTTTATCCTGCGGCCAACCGCTGCAGCTGCAGGCGCTGCAACACGCGCACACATCACTGTGTTCGCAACAGCCGGATCCCTAATGACCGGTGCACCGTGACCCTTGGCCAGACGCCGCCCTCTGTGGGAACCTGCTAACCAAATGCACATGCATGGCAATGCGACAGCTGATGGACTCTCTGCTTGTTGATGTCAGTGTTGTGCATCTCAGCTCCTCATATTGTTTTCTCTAGTTTGTTTGGCAATGTAGGCTATTGCTATAAAACACTATGTTGAACATGTATTTAACTTTATTACAAGCAACAGATGAGTGCATAATACGTGTATTTCCATATTAAAG
>XM_039800274.1
ATGGGTTTGTTAGTGGTGAAATGCATGCTGCTGTGTGCATTGATGCATGGAGCGGTGTGTGCCTGTATGCTGAAGAATCACACCATATGGATTGAGAGGCACGACTGTGGCCAGTGTGTGGCCATCAACACTACCATCTGCAGCGGCTACTGTTACACACAGGACACCAATTTGAGGGGACGGCTTGGGAGGAGTTTCCTGATCCAGCGCAGCTGTGTGCCTCTGTCCTTGGTGTACCGAGCTGCCCATGTGCCAGGCTGCCCTCAGGATGTCAGCCCTCAGCTGTTTTATCCTGCGGCCAACCGCTGCAGCTGCAGGCGCTGCAACACGCGCACACATCACTGTGTTCGCAACAGCCGGATCCCTAATGACCGGTGCACCGTGACCCTTGGCCAGACGCCGCCCTCTGTGGGAACCTGCTAACCAAATGCACATGCATGGCAATGCGACAGCTGATGGACTCTCTGCTTGTTGATGTCAGTGTTGTGCATCTCAGCTCCTCATATTGTTTTCTCTAGTTTGTTTGGCAATGTAGGCTATTGCTATAAAACACTATGTTGAACATGTATTTAACTTTATTGGGAAAATTGTGTAAATTAATCAATGACAATGAATATACAAGCAACAGATGAGTGCATAATACGTGTATTTCCATA

Function

NR:

description
PREDICTED: thyrotropin subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68439 False 599 TUCP 0.51 3 19767652 19768564
XM_039800274.1 True 656 mRNA 0.50 2 19767626 19768558

Neighbor

gene id symbol gene type direction distance location
wnt5a wnt5a,LOC103367232,LOC102799772 coding upstream 352436 19366783 ~ 19415190 (+)
LOC120559318 NA coding upstream 440072 19241532 ~ 19327554 (+)
tlr9 NA coding upstream 527017 19235549 ~ 19240609 (+)
apeh NA coding upstream 532240 19225260 ~ 19235386 (+)
LOC120559315 LOC103367228,LOC104955723 coding upstream 546691 19205219 ~ 19220935 (+)
LOC120558919 LOC104941542 coding downstream 23616 19792180 ~ 19793225 (+)
LOC120558889 LOC104931868,LOC102202682,LOC102797917,LOC108235291 coding downstream 150830 19919394 ~ 19925436 (+)
kcna2b LOC104931876,LOC104941545,LOC103149635,LOC106925543,LOC107087053 coding downstream 173460 19942024 ~ 19951021 (+)
LOC120558887 LOC103360394,LOC100692715,LOC101485468,LOC102788976 coding downstream 204639 19973203 ~ 19976195 (+)
ube2t ube2t coding downstream 232585 20001149 ~ 20004112 (+)
G51218 NA non-coding upstream 5147 19762177 ~ 19762479 (+)
G51182 NA non-coding upstream 8935 19698081 ~ 19758691 (+)
G51215 NA non-coding upstream 48189 19716772 ~ 19719437 (+)
G51212 NA non-coding upstream 52947 19712766 ~ 19714679 (+)
G51206 uba1 non-coding upstream 60126 19702097 ~ 19707500 (+)
G51220 LOC105935863,LOC107390966,LOC108235152 non-coding downstream 511 19769075 ~ 19801577 (+)
G51221 NA non-coding downstream 9504 19778068 ~ 19805293 (+)
G51282 NA non-coding downstream 222209 19990773 ~ 19992193 (+)
G51283 NA non-coding downstream 227317 19995881 ~ 19996116 (+)
G51317 NA non-coding downstream 389225 20157789 ~ 20171119 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 303914 19456477 ~ 19463712 (+)
G50983 LOC103366028 other upstream 1081324 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 1467293 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1981228 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 2570453 17185911 ~ 17197173 (+)
zgc:194242 NA other downstream 227913 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 295428 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 677407 20445971 ~ 20532569 (+)
G51716 NA other downstream 1521024 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 1592726 21361290 ~ 21364430 (+)

Expression


Co-expression Network