G51220 (LOC105935863,LOC107390966,LOC108235152)


Basic Information

Item Value
gene id G51220
gene name LOC105935863,LOC107390966,LOC108235152
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19769075 ~ 19801577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU68442
GAAACGCCCCTGGCTGCTTCACGTGCTTCCTTGCTTtttccatccattcattcagtCAGCCCTTCAGCGGTGCGGAGGGACATACAAGAACTTCTAAAGCAGCACCTAATTTTCCATTTTAAGTGTCTCTCGGGGACTCCCAGCCTGCTCTCCCTCTGCGGCCTCCTTTGTGCTGACCAACTTTTGCACTCAAAACAACCAAGAACCATGGCACAGCAACAGCAGATTAGCCTCCCAGCCAAACTGATTAATGGAGGGATTGCAGGCATGGTCGGGGTTACCTGTGTGTTCCCAATTGACCTGGCAAAGACCCGCTTGCAGAACCAGCGCAGCGGGCAGCAACTCTACAAGAACATgATGGATTGCTTAATAAAGACAGTTAAATCTGAAGGCTACTTTGGCATGTACAGAGGT
>TU68443
GCGCATTAGCTGTTTAATGGCACTTCATCAGATGTCACTGCTACATAATCTAACACTGCACGACACAAACCCTGCCGCCAACATCACTGGTCTTTTCCGgtaactgcatttttttttcaggctTCTGATtgtccaacttttttttttcttctttgcacTACTGGGATTTTCTTTTGCCTGTTGGCTCGGCAGTGCATGGGTATACGGGAGGGTGTATTTTTATTAGAACGAACAAAGGATAAACCCATTTAAAAAATACCAGTATACTGTGTGGATTAGGCCTTAGATTTATCCTTAAATATGCTCCATATCAATTGCCCTTCACTGACTGCCTCTCTTTTAACCTAACATGTATATCCCTCTAACTGCCTAGTGAGACTACTAAGTGTGGCTGTTacatgttgttgcaaaaaaaaacttacagTGCAAGGGAGGATCTACTAAGTAATACCAATGGCAGAATATGGAAAGATTACTGGAATAGCTTCAATCCTGTTTTAAAGGGTTACATGTGAAACTGGGTCATGGATGTTGATCCcggtatatgtatatactgtttATTTTTAAGCGGATATAATTTGATGAATAACTTCTCTCACAAAATTGTCAGGTGTTGTCCTTTGAACAACCTGGTTTGGAAAAGGGGTTGTTTAAGGGGTCCTAGCCTATGAACgaacaaacaaaacatctgGACTTTCTGTCCACTAGTATGCCATACAGTGATCCTGTGTTGTACTCATTTGTTACAAGGAATGATTTCCTGTCTGTTAATCTACACTGCTTTATAATTGGTTACAAGACTGTAGCTGACCATAGGTGCTTTCTGGTGTGTTTTTTCCAGAACAATTGGGGTTGAGGTATTTGGGTTTTCTACTAGGCACTGTGAATCACTGGCAGTATACACAACTATTGTTTATTTAACATGCAAGCTTGAACTCTGACTCAATAAGACCTTCTCCAGTTAACTTTGGAGAGCTGCATTTTTGTGGAGGATATGTTGATGGTGGTAAACTAGTCTAATGATGGGCAGTACTTAATTAATGGGATTCAATGTGCTTTTGGGACCAAGTCTTATGGAAAAGGTGCAACTTAACCTAAACATAGCTACTTTCTCTAAGTAGACTGTGACTGGTCAGGTTTTCTTGTCAGTTAGAGATACAGGAACCCACACCAATGTGTCATGTTAGGCATTTAGAAGCAGAACAGAGTGAAACGGGCTACACTGGTCAAAAGTACTTTCAAGAGttttatgtaaatatgtgtATGGTTTCAACCAGTTCAGTAGATTATTTTTCAGATATAGATTTTTAAATGCTGAA
>TU68450
CCACACTCTTTTCATTGGCTAAGACGTCAGGTCTGAAACGCCCCTGGCTGCTTCACGTGCTTCCTTGCTTtttccatccattcattcagtCAGCCCTTCAGCGGTGCGGAGGGACATACAAGAACTTCTAAAGCAGCACCTAATTTTCCATTTTAAGTGTCTCTCGGGGACTCCCAGCCTGCTCTCCCTCTGCGGCCTCCTTTGTGCTGACCAACTTTTGCACTCAAAACAACCAAGAACCATGGCACAGCAACAGCAGATTAGCCTCCCAGCCAAACTGATTAATGGAGGGATTGCAGGCATGGTCGGGGTTACCTGTGTGTTCCCAATTGACCTGGCAAAGACCCGCTTGCAGAACCAGCGCAGCGGGCAGCAACTCTACAAGAACATGTAGGAGTCAAACTcaccaaaaaaacaaccatGCCCTTTCTCTTGATTTGAAATTGTAATCTTAATAAAATGCACATGCATACTGTCAAActcaccaaaaaaaaaccatGCCCTTTCTCTTGATTTGAAATTGTAATCTTAATAAAATGCACATGCATACTGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68442 False 414 lncRNA 0.50 4 19794064 19797376
TU68443 True 1319 lncRNA 0.38 2 19775320 19801577
TU68450 False 556 lncRNA 0.46 4 19769075 19796396

Neighbor

gene id symbol gene type direction distance location
wnt5a wnt5a,LOC103367232,LOC102799772 coding upstream 353885 19366783 ~ 19415190 (+)
LOC120559318 NA coding upstream 441521 19241532 ~ 19327554 (+)
tlr9 NA coding upstream 528466 19235549 ~ 19240609 (+)
apeh NA coding upstream 533689 19225260 ~ 19235386 (+)
LOC120559315 LOC103367228,LOC104955723 coding upstream 548140 19205219 ~ 19220935 (+)
LOC120558889 LOC104931868,LOC102202682,LOC102797917,LOC108235291 coding downstream 117817 19919394 ~ 19925436 (+)
kcna2b LOC104931876,LOC104941545,LOC103149635,LOC106925543,LOC107087053 coding downstream 140447 19942024 ~ 19951021 (+)
LOC120558887 LOC103360394,LOC100692715,LOC101485468,LOC102788976 coding downstream 171626 19973203 ~ 19976195 (+)
ube2t ube2t coding downstream 199572 20001149 ~ 20004112 (+)
LOC120558918 LOC103360403 coding downstream 257537 20059114 ~ 20061812 (+)
G51218 NA non-coding upstream 6596 19762177 ~ 19762479 (+)
G51182 NA non-coding upstream 10384 19698081 ~ 19758691 (+)
G51215 NA non-coding upstream 49638 19716772 ~ 19719437 (+)
G51212 NA non-coding upstream 54396 19712766 ~ 19714679 (+)
G51206 uba1 non-coding upstream 61575 19702097 ~ 19707500 (+)
G51282 NA non-coding downstream 189196 19990773 ~ 19992193 (+)
G51283 NA non-coding downstream 194304 19995881 ~ 19996116 (+)
G51317 NA non-coding downstream 356212 20157789 ~ 20171119 (+)
LOC120558477 NA non-coding downstream 859720 20661297 ~ 20662553 (+)
G51386 NA non-coding downstream 950018 20751595 ~ 20752345 (+)
LOC120558920 LOC104941542 other upstream 511 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 305363 19456477 ~ 19463712 (+)
G50983 LOC103366028 other upstream 1082773 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 1468742 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1982677 17741371 ~ 17786398 (+)
zgc:194242 NA other downstream 194900 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 262415 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 644394 20445971 ~ 20532569 (+)
G51716 NA other downstream 1488011 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 1559713 21361290 ~ 21364430 (+)

Expression


Co-expression Network