G51734 (acvr1b,LOC100709886,LOC101485924)


Basic Information

Item Value
gene id G51734
gene name acvr1b,LOC100709886,LOC101485924
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21361290 ~ 21364430 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69116
aatttaTTGTATGTcatctatatacacacacacacacttttcaacTAATTATGAAAAGATTTGCACGATGAAATCTCAAAGTATTACTTATGAACAGGATGTCTTATGCTCATATACCCATGGCAACAAACCAAACATGGACAGGAGTGTTTTGACAATTTTGGTTCAACTGACAGCCATCTCCCCATTTTCCCTCCGAGCTCTCCATCTCCGATCTGCCGCTGAACTTCCACCCATGTTAACATGTAGCAGCAACATTTCTGGGGTACACAGCCAACGCCCCGAAGaaaaaggaggaaagaaaaCCGGTAGGAAGAAGGAAAAGACAAGTCTTAAGTTCTTCTACCTCAGTGCAGAGGACCCAGTGTTTGAGACAGCATGCAAAATGGATATTAACATGACACATGGATTCTGGATCAAGTGATGACATAACTAACATTAACTTAAGTCTATGTGGACATAACAGTGCAGAGCCCAACGGTGACAAATGTCAGTGTAATACTTTGATAGATTTGTCTGCAGACAGACTCGAAGCTGCAGACAAAGTAGAATGAAAACATGCAGTTTCACTTTACAGCATGTCAGTCTTTGAAGGTAAAAGGTCTCAACTACTTTTCACATCTAACCATATGTTCCCTGTGTGTGAACTGTCAGCAGGCGTCCTCCTCCGCTGCTCCTAATATTCCAGTGTCAATGAGAAAGAGATGTCACCCCAGAGGACATACGAGTATGTAAAAACAGATCTGCATTACTGAATTCTGAAAAGAACTCAAAAATTCCAACaattatacataaaaaaaaaaggttgcagCAAAATTATCTGGGATCAGTAGTACCAACCAAATTGCCAGGAGAGGAGCACATTAAAACTAAATTCCAGCAGATGACAGTCTATTTCCTGGCACAGTTAGATACCATGCAGACAGAGCAAAAGTACCATTCAAGCAAAATCATTGTTCAGATGTCACACTGCTGCTTGTggcataaaaaaggaaaaagaatatGCATGTTATATAAACAAATCATATGTACCCATCATCAGTAGTGTCTAAGGTCAACGTCAAAGTAAAACACCCATCATGAGTGTCTTGTctttacacaaaacacaaaaatatattcaaaaaacaaacaaacaacaaaatagtATTTTTCATTGCCATTTCATACGCCTCTTATTTGCTAAGTGTGCCCGATGTCATCACCTATCGCCAACGGGGGTTACGGCTACATTCACATTTGCGCTCCGTATCTTTTAGAATGAATGAAACAACCCCTTAATCTAACATCTGAAAGATGGTGAAGACTTGGACTGAACTACAACATTAACTTTCATAACATATTAGACTCTGGCTCGTCACATCTCATCTCACAGTGTTGCatcaatatgaaataaaaactattgacaaataaataaaagtaaaaccaTCCCAAACAATATCCCTGCCACATTTCAAACTAACACCAGGACTGGACCACATCCGTTATGTGATACCTGCAGGGGTCACACATGATGAGGAAGCTACAGTTGAGTGCGACTCGTTTCTGTTCGAATGATATTCAAGTGAGGGATTAAAAAGCTAAATCTGGCTGTTCGTGCTTATTTACCAACTGTCTGATCACGGGATGTGTGTAATAAGCTACAGCCTACACCAAAAGGACATCTTTGTGTCTAAGGAGATAGAAACATTGCtagtagtacacacacacacacacacacacagttagtCCGTCACGGGACACATTTCAGAGAGGTAAAAATTTAAATCCTGTCACTGTACAATAGTAATAATTCCTGCCATGggaaatgaaaacagaaaaaggtTGAGTGGGATGATATTAACAGTGGTAGTGCTGTAGTTTTGCGGCCCATGGTGAAGGGGAGGTTGAATGGGAACAGAGGGGGGCGAGAAAAGGAGATGGGGCGAGAAAAGTCAAGAGGGGACGGGTGATTCTCAGTAGTTTTGGCTAAAAAGGTGAGGTAGGCCTCGTCACAACTTGGAGTGTGGCTTTAAAACTGGCAGGGTTTTCATTTGCAGTCTGTCTTTAGTGTTCGTTTCCTATGGGAGGGTGGTCTGGTTGTGCGTCTCCAGCACGCCTTTTCGCCGCTCACATCTTGACGTCCTCCTCCACACTGAGCTGAGACAGGGTCTTCTTGATGCGCAGTGCTGTCAGTCTGGCTGCTCCGTTGGCATACCAGCACTCCCTCATGATCTTCCCCATCACACGCAGTGACTGCAGGAAAG
>TU69117
aatttaTTGTATGTcatctatatacacacacacacacttttcaacTAATTATGAAAAGATTTGCACGATGAAATCTCAAAGTATTACTTATGAACAGGATGTCTTATGCTCATATACCCATGGCAACAAACCAAACATGGACAGGAGTGTTTTGACAATTTTGGTTCAACTGACAGCCATCTCCCCATTTTCCCTCCGAGCTCTCCATCTCCGATCTGCCGCTGAACTTCCACCCATGTTAACATGTAGCAGCAACATTTCTGGGGTACACAGCCAACGCCCCGAAGaaaaaggaggaaagaaaaCCGGTAGGAAGAAGGAAAAGACAAGTCTTAAGTTCTTCTACCTCAGTGCAGAGGACCCAGTGTTTGAGACAGCATGCAAAATGGATATTAACATGACACATGGATTCTGGATCAAGTGATGACATAACTAACATTAACTTAAGTCTATGTGGACATAACAGTGCAGAGCCCAACGGTGACAAATGTCAGTGTAATACTTTGATAGATTTGTCTGCAGACAGACTCGAAGCTGCAGACAAAGTAGAATGAAAACATGCAGTTTCACTTTACAGCATGTCAGTCTTTGAAGGTAAAAGGTCTCAACTACTTTTCACATCTAACCATATGTTCCCTGTGTGTGAACTGTCAGCAGGCGTCCTCCTCCGCTGCTCCTAATATTCCAGTGTCAATGAGAAAGAGATGTCACCCCAGAGGACATACGAGTATGTAAAAACAGATCTGCATTACTGAATTCTGAAAAGAACTCAAAAATTCCAACaattatacataaaaaaaaaaggttgcagCAAAATTATCTGGGATCAGTAGTACCAACCAAATTGCCAGGAGAGGAGCACATTAAAACTAAATTCCAGCAGATGACAGTCTATTTCCTGGCACAGTTAGATACCATGCAGACAGAGCAAAAGTACCATTCAAGCAAAATCATTGTTCAGATGTCACACTGCTGCTTGTggcataaaaaaggaaaaagaatatGCATGTTATATAAACAAATCATATGTACCCATCATCAGTAGTGTCTAAGGTCAACGTCAAAGTAAAACACCCATCATGAGTGTCTTGTctttacacaaaacacaaaaatatattcaaaaaacaaacaaacaacaaaatagtATTTTTCATTGCCATTTCATACGCCTCTTATTTGCTAAGTGTGCCCGATGTCATCACCTATCGCCAACGGGGGTTACGGCTACATTCACATTTGCGCTCCGTATCTTTTAGAATGAATGAAACAACCCCTTAATCTAACATCTGAAAGATGGTGAAGACTTGGACTGAACTACAACATTAACTTTCATAACATATTAGACTCTGGCTCGTCACATCTCATCTCACAGTGTTGCatcaatatgaaataaaaactattgacaaataaataaaagtaaaaccaTCCCAAACAATATCCCTGCCACATTTCAAACTAACACCAGGACTGGACCACATCCGTTATGTGATACCTGCAGGGGTCACACATGATGAGGAAGCTACAGTTGAGTGCGACTCGTTTCTGTTCGAATGATATTCAAGTGAGGGATTAAAAAGCTAAATCTGGCTGTTCGTGCTTATTTACCAACTGTCTGATCACGGGATGTGTGTAATAAGCTACAGCCTACACCAAAAGGACATCTTTGTGTCTAAGGAGATAGAAACATTGCtagtagtacacacacacacacacacacacacacacacacacacacacggttagtCCGTCACGGGACACATTTCAGAGAGGTAAAAATTTAAATCCTGTCACTGTACAATAGTAATAATTCCTGCCATGggaaatgaaaacagaaaaaggtTGAGTGGGATGATATTAACAGTGGTAGTGCTGTAGTTTTGCGGCCCATGGTGAAGGGGAGGTTGAATGGGAACAGAGGGGGGCGAGAAAAGGAGATGGGGCGAGAAAAGTCAAGAGGGGACGGGTGATTCTCAGTAGTTTTGGCTAAAAAGGTGAGGTAGGCCTCGTCACAACTTGGAGTGTGGCTTTAAAACTGGCAGGGTTTTCATTTGCAGTCTGTCTTTAGTGTTCGTTTCCTATGGGAGGGTGGTCTGGTTGTGCGTCTCCAGCACGCCTTTTCGCCGCTCACATCTTGACGTCCTCCTCCACACTGAGCTGAGACAGGGTCTTCTTGATGCGCAGTGCTGTCAGTCTGGCTGCTCCGTTGGCATACCAGCACTCCCTCATGATCTTCCCCATCACACGCAGTGACTCGTAGCTCTGCCACCAGTTGGGCACATTGGGCCTCAGTTTCTGGTCACACACCACCTTCCTCATCTCTTCTATGGCGGGGTCAGAGGGCACAAGGTCGTAGTAGGGCAGCTGGTACTCCTCGTGGATACCTGCAGTACACAATGAGGAAGCTCTCAGTCTCTGGCTTCACGCGCCTGTACATTAGACCGATTCATTTCTTTCCATCAGCTGCTGTGTGTGGTCGTACCTCCTGCGTTGCAGCGGCGTGCAATCTCCCAGTACACCAGGCCCAGCGCGTAGATGTCAGCACACTTGAAGGAATCAAAGTGTTTCATGTTGATGGTTTCGTCCAGGACTTCTGGAGCCATGTACCTGAAGGTAGACACAAAGGCAGAAATGAGAAAGTTTATATGATTGAGTAAACCATCACCAG

Function

symbol description
acvr1b Enables several functions, including ATP binding activity; activin receptor activity, type I; and inhibin binding activity. Contributes to activin binding activity; activin-activated receptor activity; and growth factor binding activity. Involved in several processes, including cell surface receptor signaling pathway; positive regulation of erythrocyte differentiation; and protein phosphorylation. Located in cell surface and cytosol. Is integral component of plasma membrane. Part of activin receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic cancer.

NR:

description
PREDICTED: activin receptor type-1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69116 False 2243 TUCP 0.42 2 21361290 21363640
TU69117 True 2665 TUCP 0.43 3 21361290 21364430

Neighbor

gene id symbol gene type direction distance location
kmt2d kmt2d coding upstream 1303 21323314 ~ 21359987 (+)
dhh dhh coding upstream 43368 21312552 ~ 21317922 (+)
lmbr1l lmbr1l coding upstream 53122 21295147 ~ 21308168 (+)
wnt1 wnt1 coding upstream 93044 21263048 ~ 21268246 (+)
lrp1ab LOC103362052 coding upstream 194873 21071707 ~ 21166417 (+)
arhgef25a LOC102292298,LOC100705949,LOC101484609 coding downstream 52706 21417136 ~ 21473374 (+)
slc26a10 LOC103368469 coding downstream 134276 21498706 ~ 21504920 (+)
LOC120559688 NA coding downstream 188822 21553252 ~ 21555195 (+)
c1galt1a LOC104956867 coding downstream 242909 21607339 ~ 21620201 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding downstream 373050 21737480 ~ 21746717 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding upstream 72585 21277776 ~ 21288705 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding upstream 127761 21230270 ~ 21233529 (+)
G51625 NA non-coding upstream 138733 21220651 ~ 21222557 (+)
LOC120558354 NA non-coding upstream 581891 20772453 ~ 20779399 (+)
G51386 NA non-coding upstream 608945 20751595 ~ 20752345 (+)
G51735 NA non-coding downstream 177 21364607 ~ 21365558 (+)
G51736 acvr1b,LOC105897348 non-coding downstream 1191 21365621 ~ 21366055 (+)
G51737 acvr1b non-coding downstream 1871 21366301 ~ 21366577 (+)
G51738 LOC104956875,LOC101062677 non-coding downstream 2246 21366676 ~ 21367030 (+)
G51739 NA non-coding downstream 11601 21376031 ~ 21376263 (+)
G51716 NA other upstream 70328 21289588 ~ 21290962 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 828721 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 1295555 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 1360852 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 1592726 19767626 ~ 19768564 (+)
G51804 NA other downstream 194460 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 352679 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 418787 21783217 ~ 21807914 (+)
G51926 NA other downstream 539112 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 682333 22046763 ~ 22060645 (+)

Expression


Co-expression Network