G51902 (smc1a)


Basic Information

Item Value
gene id G51902
gene name smc1a
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21819865 ~ 21820675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69318
TTTCTCAATAGTCTGCTGCTCCCTCATCAGCCTGCCAAGCTCCTTCTTCTTGTCCTTCAGCTCCTCCTCCACATGGTCCATCTTTTTACGGTCCTTATCAATCTCCTTGTTCCGCTGGCCCAGCTCTTTATTCAGCTTCTCAATCTCAGTCTCATTGTGGTACAGCTTGAAGAGCTGCAACTGAACACTAGCCCTGGCCACTTCGTCTTTCAGACGCTGGTACCGCTCAGCctcctccttctcttgcTTGGCTTCTTTGCGCTCAGCAGCAATGTTTTTCTTACGATGGTAATTGAACTGTGTGTCCTCCTCTGCTTTCACCATTTCCTTCTTCCTGCGTTCGTACTCCTGGGCCAGCTCTCCAGAACGTGAGATTTCCTCAAACAGAGCTGTCCGCTCCTTGGGGTTCTTCATGGCAATAGACTCCACAGCTCCCTGGAGGGACAATAAGCA

Function

symbol description
smc1a Predicted to enable DNA binding activity. Acts upstream of or within central nervous system development and developmental growth. Predicted to be located in chromosome. Predicted to be part of meiotic cohesin complex. Predicted to be active in nucleus. Is expressed in central nervous system and tail bud. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 2 and developmental and epileptic encephalopathy. Orthologous to human SMC1A (structural maintenance of chromosomes 1A).

NR:

description
PREDICTED: structural maintenance of chromosomes protein 1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69318 True 453 lncRNA 0.51 2 21819865 21820675

Neighbor

gene id symbol gene type direction distance location
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 38915 21776471 ~ 21780950 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 73148 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 199664 21607339 ~ 21620201 (+)
LOC120559688 NA coding upstream 264670 21553252 ~ 21555195 (+)
slc26a10 LOC103368469 coding upstream 314945 21498706 ~ 21504920 (+)
ribc1 NA coding downstream 2843 21823518 ~ 21827890 (+)
idh3g idh3g coding downstream 202159 22022834 ~ 22028294 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 290312 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 363621 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 382416 22203091 ~ 22213864 (+)
G51900 smc1a non-coding upstream 6234 21812612 ~ 21813631 (+)
G51811 NA non-coding upstream 241610 21577388 ~ 21578255 (+)
G51761 LOC103385089,LOC104932540,LOC104956873 non-coding upstream 438616 21379001 ~ 21381249 (+)
G51739 NA non-coding upstream 443602 21376031 ~ 21376263 (+)
G51738 LOC104956875,LOC101062677 non-coding upstream 452835 21366676 ~ 21367030 (+)
LOC120559724 NA non-coding downstream 74666 21895341 ~ 21896456 (+)
G51921 huwe1 non-coding downstream 78449 21899124 ~ 21900231 (+)
G51922 huwe1 non-coding downstream 79769 21900444 ~ 21901003 (+)
G51927 NA non-coding downstream 84380 21905055 ~ 21906248 (+)
G51935 NA non-coding downstream 93650 21914325 ~ 21914837 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 11951 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 99742 21717109 ~ 21720123 (+)
G51804 NA other upstream 260516 21558890 ~ 21559349 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other upstream 455435 21361290 ~ 21364430 (+)
G51716 NA other upstream 528903 21289588 ~ 21290962 (+)
G51926 NA other downstream 82867 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 226088 22046763 ~ 22060645 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 269522 22090197 ~ 22094890 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 735654 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 741479 22562154 ~ 22562521 (+)

Expression


Co-expression Network