G51921 (huwe1)


Basic Information

Item Value
gene id G51921
gene name huwe1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21899124 ~ 21900231 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69342
CAGGTATGAGCAGATGGCAGGCGGTCAGTGGAGCGATCGTCACGGTGGATCTGGAACTTCTGGATGCCGTTCATGCCCTCCAGAGCAGCAAAACCCTGGAGGGGAACCTTGGACGTGCCGGTGACAAACTGTAAGAACTTGGCCCGGTCTGCCTGGTCAAAAGACCGCAAGGCCCTCCAAAACCACTGGATCTatagtataaaaaaataaaaagacaaatagTGGTTATAAATTTGCCCCAATATAATTTTGTCTCTgttcttatgtgtgtgtttttttttaaaactcattCATACCTGGATGGAGCTGGACTGGTATTTGTGATATTCAGTGTTGGCCTTTAGGTCATCGATGTCAATAGTGGGCAGGCCAGAGATGAGCAGCTCCAGCTCCTGCTCAGTGAAGATGGAGATCAGCCTCTTGGGGATGATCTCGTAAAATCCCTCAAGGAAGGCTGCTAGCTGCTTGCGGATTGCACctgtcatcttcatctggCATACCAGGTGCACATactcttttttgttttcctctgtgACCAGGATATTGGCTCCATTTGGCTTGAGGTCTCTTACCTCACACACTCCAAACTCCTGGACCTACACAGAGCACATGCAGGCTTTCAGTATCATTCGTTTCAGCTTAGAATTTAAC

Function

symbol description
huwe1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including base-excision repair; cellular protein metabolic process; and positive regulation of protein catabolic process. Predicted to act upstream of or within DNA repair. Predicted to be active in Golgi membrane and nucleus. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Turner type. Orthologous to human HUWE1 (HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HUWE1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69342 True 651 lncRNA 0.47 2 21899124 21900231

Neighbor

gene id symbol gene type direction distance location
ribc1 NA coding upstream 71234 21823518 ~ 21827890 (+)
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 118174 21776471 ~ 21780950 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 152407 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 278923 21607339 ~ 21620201 (+)
LOC120559688 NA coding upstream 343929 21553252 ~ 21555195 (+)
idh3g idh3g coding downstream 122603 22022834 ~ 22028294 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 210756 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 284065 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 302860 22203091 ~ 22213864 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 340251 22240482 ~ 22244763 (+)
LOC120559724 NA non-coding upstream 2668 21895341 ~ 21896456 (+)
G51902 smc1a non-coding upstream 78449 21819865 ~ 21820675 (+)
G51900 smc1a non-coding upstream 85493 21812612 ~ 21813631 (+)
G51811 NA non-coding upstream 320869 21577388 ~ 21578255 (+)
G51761 LOC103385089,LOC104932540,LOC104956873 non-coding upstream 517875 21379001 ~ 21381249 (+)
G51922 huwe1 non-coding downstream 213 21900444 ~ 21901003 (+)
G51927 NA non-coding downstream 4824 21905055 ~ 21906248 (+)
G51935 NA non-coding downstream 14094 21914325 ~ 21914837 (+)
G52006 NA non-coding downstream 130978 22031209 ~ 22031519 (+)
LOC120558642 NA non-coding downstream 185035 22085266 ~ 22086233 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 91210 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 179001 21717109 ~ 21720123 (+)
G51804 NA other upstream 339775 21558890 ~ 21559349 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other upstream 534694 21361290 ~ 21364430 (+)
G51716 NA other upstream 608162 21289588 ~ 21290962 (+)
G51926 NA other downstream 3311 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 146532 22046763 ~ 22060645 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 189966 22090197 ~ 22094890 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 656098 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 661923 22562154 ~ 22562521 (+)

Expression


Co-expression Network