LOC120558641 (LOC103363734,LOC104967523)


Basic Information

Item Value
gene id LOC120558641
gene name LOC103363734,LOC104967523
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22090197 ~ 22094890 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69471
TATTAAAGTTATACATCTCACATTTCCCAGTACTCATATTTAcgaccaaaacaaacaaagcagtcagaatagaaaaaaaatatatacttattCGGCTTTCCAGATATACAGACAAAATTATAAAGTGTGAAACAAGttacaaataattaaatgtatacAAATTCCTTACAGCTACAGTATTCAGTTTTATCAACTATGGGACTACCTCATTTTGGTAAACATTTGATGAACAATATGTGTAGTTTTATATACGTACATACATGTGCATTTGTTGACTAAAACCACTGAGCAAATTTGGCTTGAAAAGGAAACGGTTGAATATCAACACCTACACAGATGTAGATATAGAGGCATAAGTTGCATAAACACATTtagctgcacacaaacacatctgtGCATTTCAAGTAATCCACAGTTTCCAAATTGTACTGCAGGTCTGCAGTCACAGCAGGGTTCTGCTGtacaaaacatgaataaaaaagGAGTGGGGAGCCACCCGATGGAAAGAAGCCCAAACCAATCACATTGACCTCAGAGAAGTGATTATGGGTCAGTGATCGCAGTTTTCTAGAAATAGGATGTGTTGAAAGCTAGTGTCAGATGGCATTACCCTGCACCTCCATTTTATTATGTATCCCTCTCTTTTCATGTCATCTACAGATGCCTAAACTTATGCCTCTCagtccagtggagctgctgctctaAAGAGCCCTGCTCCTCTCCCCCTGCGTCCATCCCGCTTCCCTTTCTTTTGGGGAGCTtgggcagagggagaggaggcggTGGAGGAGGGATCCTGCAGTGCTTGCCGCGAGAGAAGTTCCATGAAGACAGAGTCCATCTGGCGACAGACCTCCTGTGagatgaaataaacaatgTGTCATGCATTTCTCATACACCGGCCCTTGTACTTCACTCTGGCTGGGGAAGATGCTTTCGTGCTGGAGGATGATGCTGTTCACCAGGGCGTTGATCTGAGGCTGCAGGGTGACAACATCATCATCGTGAGCCCCTCTTACCAGGCTGGGGCCAAAACACACAGCCAGGTTGTAAGGCTGCATCATGTTCTCATCACTGTACTGAGACACACTAGAGGCAGGGAGCAGAAACACAAAATTATCCAATGAAGGAGAAAGAGG
>TU69472
TCCGAATGCAATGTaaaagggaggagagtaaagacagAAAGCTCCTAAAggttagttccatataaatgcacggataagtcgttgttttgtcgttattgaaaaacaatattgaccttgtagttgaaaaaagagcctcatatggagtccgttcattcgcattcggatatcgactcgttttcactgccgaggtggtagtgGCCGGAAAGTTAACAGCTgcgATGCCTAAACTTATGCCTCTCagtccagtggagctgctgctctaAAGAGCCCTGCTCCTCTCCCCCTGCGTCCATCCCGCTTCCCTTTCTTTTGGGGAGCTtgggcagagggagaggaggcggTGGAGGAGGGATCCTGCAGTGCTTGCCGCGAGAGAAGTTCCATGAAGACAGAGTCCATCTGGCGACAGACCTCCTGTGagatgaaataaacaatgTGTCATGCATTTCTCATACACCGGCCCTTGTACTTCACTCTGGCTGGGGAAGATGCTTTCGTGCTGGAGGATGATGCTGTTCACCAGGGCGTTGATCTGAGGCTGCAGGGTGACAACATCATCATCGTGAGCCCCTCTTACCAGGCTGGGGCCAAAACACACAGCCAGGTTGTAAGGCTGCATCATGTTCTCATCACTGTACTGAGACACACTAGAGGCAGGGAGCAGAAACACAAAATTATCCAATGAAGGAGAAAGAGG
>TU69473
TTTATGAACTCTTATTAAAAGCTGTTACTCATAACTTACAAACCCTTAATAAAAAGGGTGCCTTGTCACATAGTGAGTTCAGTCATTTAAATTGAGAAACAAGACAGACCTTGTCTACTTTAACGACAATATCCTCACAAGATGAGCGTTCCTGCAATCTGTATGCAGAAAAAGAAATTGgaaaacattaaatattaatttctcaCTCAAACATAACAAGTCAGTTCAGCAGCATCCAGCGATACTCACTCTCTGCGCACACAGCCAGGAGAGTGGCCCCGCCGTGGCTTGCACTGTGGCCCCATGGGAATCTGGAGCATTAACTTTCCACTTGAAGCGATGCTGCCCCCAACTTGTCCAGCCATCAACCTACTTTGGTCAATTGAACCGCTGCTGTTGGCTCTAGGACGTTCTGCTTTTATGTGTGTTGGTGCTGCAGACAATCGGGTGCTGTTGTCAGCTGAGGGTCCTGTTTCCATCTCATCTTTGCTGTGGGTGTACTCTGCTTCCACATCTCCTTCTTCAATGATAGGCTCACTGTCATCCTGTTCCAGTGTCATGCATTTCTCATACACCGGCCCTTGTACTTCACTCTGGCTGGGGAAGATGCTTTCGTGCTGGAGGATGATGCTGTTCACCAGGGCGTTGATCTGAGGCTGCAGGGTGACAACATCATCATCGTGAGCCCCTCTTACCAGGCTGGGGCCAAAACACACAGCCAGGTTGTAAGGCTGCATCATGTTCTCATCACTGTACTGAGACACACTAGAGGCAGGGAGCAGAAACACAAAATTATCCAATGAAGGAGAAAGAGG
>XR_005639159.1
tattgaccttgtagttgaaaaaagagcctcatatggagtccgttcattcgcattcggatatcgactcgttttcactgccgaggtggtagtgGCCGGAAAGTTAACAGCTgcgATGCCTAAACTTATGCCTCTCagtccagtggagctgctgctctaAAGAGCCCTGCTCCTCTCCCCCTGCGTCCATCCCGCTTCCCTTTCTTTTGGGGAGCTtgggcagagggagaggaggcggTGGAGGAGGGATCCTGCAGTGCTTGCCGCGAGAGAAGTTCCATGAAGACAGAGTCCATCTGGCGACAGACCTCCTGTGagatgaaataaacaatgTGTCATGCATTTCTCATACACCGGCCCTTGTACTTCACTCTGGCTGGGGAAGATGCTTTCGTGCTGGAGGATGATGCTGTTCACCAGGGCGTTGATCTGAGGCTGCAGGGTGACAACATCATCATCGTGAGCCCCT

Function

NR:

description
PREDICTED: rho GTPase-activating protein 4-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69471 True 1139 lncRNA 0.43 2 22092578 22094890
TU69472 False 697 lncRNA 0.50 3 22090197 22094890
TU69473 False 815 TUCP 0.47 3 22093905 22094890
XR_005639159.1 False 466 lncRNA 0.53 3 22090303 22094765

Neighbor

gene id symbol gene type direction distance location
idh3g idh3g coding upstream 61903 22022834 ~ 22028294 (+)
ribc1 NA coding upstream 262307 21823518 ~ 21827890 (+)
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 309247 21776471 ~ 21780950 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 343480 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 469996 21607339 ~ 21620201 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 16097 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 89406 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 108201 22203091 ~ 22213864 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 145592 22240482 ~ 22244763 (+)
mipa LOC103368323,LOC101065051,LOC100704616 coding downstream 152065 22246955 ~ 22248730 (+)
LOC120558642 NA non-coding upstream 3964 22085266 ~ 22086233 (+)
G52006 NA non-coding upstream 58678 22031209 ~ 22031519 (+)
G51935 NA non-coding upstream 175360 21914325 ~ 21914837 (+)
G51927 NA non-coding upstream 183949 21905055 ~ 21906248 (+)
G51922 huwe1 non-coding upstream 189194 21900444 ~ 21901003 (+)
G52031 naa10 non-coding downstream 10755 22105645 ~ 22106945 (+)
G52035 NA non-coding downstream 16579 22111469 ~ 22137332 (+)
LOC120558498 NA non-coding downstream 78254 22173144 ~ 22176411 (+)
G52060 LOC104967533,LOC103368342 non-coding downstream 140266 22235156 ~ 22237182 (+)
G52064 NA non-coding downstream 159405 22254295 ~ 22254973 (+)
avpr2aa avpr2,LOC105897269 other upstream 29552 22046763 ~ 22060645 (+)
G51926 NA other upstream 186120 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 282283 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 370074 21717109 ~ 21720123 (+)
G51804 NA other upstream 530848 21558890 ~ 21559349 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 461439 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 467264 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 747154 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 896362 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1651475 23746365 ~ 23765165 (+)

Expression


Co-expression Network