G52210 (LOC104964406,LOC106525460,LOC105931770)


Basic Information

Item Value
gene id G52210
gene name LOC104964406,LOC106525460,LOC105931770
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22556329 ~ 22560328 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69718
agacacactaaaaATCAAAAGTCATGACAgaaacagatacacaaacatgcatttgtgggggATTTCTATTAATACAAACCAGGTCTGTTGAGATGTCTCTGTTAATAATCACTTATTAACATAGTAGCTAGTGGTCTTATTGTAAGTAAAGAATTAGACTGGTGTGGCAGAGAAGTTGAACAAATAAATAGTAATGaccataaaaaacataaaaaatatccaTCTTCTTTTCTTCAACAAATGTTGATCCCCATAATTATGAATGAAAAATGAGTACTTCCACTCCCTCATCACAAACAGAATTGTTATAAAGATTTAAGAAGACATTTCTAAATGTGTATGCATGATTCCTTTCAAATTCTGatattccaaaatgtaatttaaaattcaCTAAGAGATGTGTAGTGAGCTGGTGCCTctgtgatgtttgtttttttccatatgtaACTCAGCAGACAGGGAACATGAAGATAGGGCCACTATGGTGAGATGCTGCAGGGGCTGAAGGGAGCCTCGGGGCCTCACTGCTCAGACGTCTGTGTCCGTCTCAGGTTGTCCTTCACACGGACAAACTCTGGGATCTTCTGCTGGTTCTCCAGCCGCCTGATCTCCTCCTGCTCATACTCTTGCAGCTTCTGCTGCCTCTTGCGGAGCTCCGTCTCTAGATCTGAGGGCTGCTGTCgtgccatctcctcctccttgtGCAGCTCCAGTCTGCGCTGCTCCAACACTCGCTTCAGCTCCGGTTTCTCCTCCAACAGCAGGCCCCGTTTATGGCTGAGCAGCAGTTCCCGGTGCAGGTTCTGGTAGCTCGGTGTCTCCACTGAGGAACCGTTCAGTTTCCTGGGCTGAAGGACCTCGTCACCGCTGCAGTCTGCTGTAGACTGACGGGACAGCCTCTGGCGACCAACAGAACTCTCTTTTTTGTGTTGTCCATATCCTGGTTTTTTTCTTGCAGTTGACCCCTCCATGGCAGGATGGTGGAGGTCCACTGTTTCTGTCCACAAACAGTGTTCTTGTTTTAGTCCATTGTTAAAAGAATCACACCTCCTCACATagtctgtctgttgtctgtttCCTTGCTGCATCCAAGTCCAACATATTGCTGTTAATGAGGCATCCTCAGACTCAATGTGCCACCTAGCAGTAGTCAATATTCGTAGTAGACACTGAAA

Function

NR:

description
PREDICTED: protein FAM107B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69718 True 1175 TUCP 0.45 5 22556329 22560328

Neighbor

gene id symbol gene type direction distance location
LOC120558833 NA coding upstream 10489 22538280 ~ 22545840 (+)
rpl10a rpl10a,LOC103141192 coding upstream 18176 22535497 ~ 22538153 (+)
fance NA coding upstream 21724 22530906 ~ 22534605 (+)
mkrn4 NA coding upstream 25623 22525297 ~ 22530706 (+)
ppardb ppard coding upstream 31389 22517239 ~ 22524940 (+)
smc5 smc5 coding downstream 5616 22565944 ~ 22581585 (+)
elapor1 kiaa1324 coding downstream 25103 22585431 ~ 22596202 (+)
mapk14a LOC103368176,LOC104964410,LOC104939458 coding downstream 36896 22597224 ~ 22610796 (+)
srpk1a srpk1 coding downstream 51642 22611970 ~ 22627159 (+)
cpne5a NA coding downstream 93173 22653501 ~ 22725592 (+)
G52185 NA non-coding upstream 72228 22480543 ~ 22484101 (+)
G52179 NA non-coding upstream 80015 22474230 ~ 22476314 (+)
G52054 NA non-coding upstream 209683 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 301356 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 319147 22235156 ~ 22237182 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 70266 22630594 ~ 22631144 (+)
G52287 NA non-coding downstream 165545 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 166269 22726597 ~ 22729555 (+)
G52294 NA non-coding downstream 189735 22750063 ~ 22762554 (+)
G52333 NA non-coding downstream 274470 22834798 ~ 22847296 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 461439 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 495684 22046763 ~ 22060645 (+)
G51926 NA other upstream 652252 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 748415 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 836206 21717109 ~ 21720123 (+)
LOC120559933 NA other downstream 1826 22562154 ~ 22562521 (+)
lamtor5 lamtor5,LOC102787529 other downstream 281716 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 430924 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1186037 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 1231119 23791447 ~ 23814406 (+)

Expression


Co-expression Network