LOC120559933


Basic Information

Item Value
gene id LOC120559933
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22562154 ~ 22562521 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69756
CGGAAGTTCTTCGTGCTTCTTATGGTTTGAATGGCTTGTGAGTGGGgcgagtgtgtgagagtgtttgGGTGAGTAAATGTggagtgtttgtgcgtgcgagtgtgtatttctgtttaaaaaaaatctacacaGTGATCTTATTTGATCTGGTCTGAGTTTGGCTCTGCTCCGATCAGAGATGATAGGAAAAGCGCTCGCGAGCCTCCGTGGCGATGAGCAGCTGGCGAGATGTTCAGGGCCTCCACGCTTCATACCGTGGTCAGAGATGATGAATTGATCAGATATACTAGTTCTGAGTGAGTTTGGGTTCATCTCGAGCTTCACAATGGACAATGAGTATAGAGGCGATTCTGA
>XR_005639388.1
AATCCGACCCGGAAGTTCTTCGTGCTTCTTATGGTTTGAATGGCTTGTGAGTGGGgcgagtgtgtgagagtgtttgGGTGAGTAAATGTggagtgtttgtgcgtgcgagtgtgtatttctgtttaaaaaaaatctacacaGTGATCTTATTTGATCTGGTCTGAGTTTGGCTCTGCTCCGATCAGAGATGATAGGAAAAGCGCTCGCGAGCCTCCGTGGCGATGAGCAGCTGGCGAGATGTTCAGGGCCTCCACGCTTCATACCGTGGTCAGAGATGATGAATTGATCAGATATACTAGTTCTGAGTGAGTTTGGGTTCATCTCGAGCTTCACAATGGACAATGAGTATAGAGGCGATTCTGATCTAT

Function

GO:

id name namespace
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69756 False 354 lncRNA 0.47 1 22562163 22562516
XR_005639388.1 True 368 guide_RNA 0.47 1 22562154 22562521

Neighbor

gene id symbol gene type direction distance location
LOC120558833 NA coding upstream 16314 22538280 ~ 22545840 (+)
rpl10a rpl10a,LOC103141192 coding upstream 24001 22535497 ~ 22538153 (+)
fance NA coding upstream 27549 22530906 ~ 22534605 (+)
mkrn4 NA coding upstream 31448 22525297 ~ 22530706 (+)
ppardb ppard coding upstream 37214 22517239 ~ 22524940 (+)
smc5 smc5 coding downstream 3423 22565944 ~ 22581585 (+)
elapor1 kiaa1324 coding downstream 22910 22585431 ~ 22596202 (+)
mapk14a LOC103368176,LOC104964410,LOC104939458 coding downstream 34703 22597224 ~ 22610796 (+)
srpk1a srpk1 coding downstream 49449 22611970 ~ 22627159 (+)
cpne5a NA coding downstream 90980 22653501 ~ 22725592 (+)
G52185 NA non-coding upstream 78053 22480543 ~ 22484101 (+)
G52179 NA non-coding upstream 85840 22474230 ~ 22476314 (+)
G52054 NA non-coding upstream 215508 22340383 ~ 22346646 (+)
G52064 NA non-coding upstream 307181 22254295 ~ 22254973 (+)
G52060 LOC104967533,LOC103368342 non-coding upstream 324972 22235156 ~ 22237182 (+)
G52272 lhfpl5,LOC102777996 non-coding downstream 68073 22630594 ~ 22631144 (+)
G52287 NA non-coding downstream 163352 22725873 ~ 22726131 (+)
G52288 NA non-coding downstream 164076 22726597 ~ 22729555 (+)
G52294 NA non-coding downstream 187542 22750063 ~ 22762554 (+)
G52333 NA non-coding downstream 272277 22834798 ~ 22847296 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 1826 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 467264 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 501509 22046763 ~ 22060645 (+)
G51926 NA other upstream 658077 21903542 ~ 21904077 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 754240 21783217 ~ 21807914 (+)
lamtor5 lamtor5,LOC102787529 other downstream 279523 22842044 ~ 22846938 (+)
atxn7l2b kcnc4 other downstream 428731 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 1183844 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 1228926 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 2378274 24940795 ~ 24945320 (+)

Expression


Co-expression Network