lamtor5 (lamtor5,LOC102787529)


Basic Information

Item Value
gene id lamtor5
gene name lamtor5,LOC102787529
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22842044 ~ 22846938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU69870
TCAGCTGATTTGAACCGGAAACTGAGGAAGCAGACAACCAAAACAAGTAATATTCATACACAGAATTTGACTTTTGCAGTTATTTACGATTGTTAATAATGGAGTCCACCCTCGAACAACATCTCGATGATACCATGAAAAATCCAGCAGTTGTCGGTGTGCTTTGCACGGATCAACAAGGACACAACCTGGGCTGCCGCGGCTCCCTGTCTGATGAACATGGCGGTGTTGTGTCAGTTTTGGCCAAACAAGCTGGCGCTCTTACTAAAGACCCAACAGACAGTCCGACTGTGTGTCTGGAATCTGAGTCAGGaAACATTCTGGTGAGGAGTCATGGCACCATCACAGTAGCAGTTCACAAGATAGCATCTTGAAGACAACACGACTCACTGAGGAATTTTTATTGTAAAGAAATGTACATGTCAACAGGAACATTAGTATGATCGCACAATCTGAATTGACTTTGAGAAAGATCTGGTGTTTCCACATGTCTGTTGTCCTTTCTATATTATCCCATAATTAAACATACATGGTCCTTTTCTAATAAATGAACTGAGATtcctttgagaa
>XM_039801980.1
GGACCCTTAGTGCACGTGACGATCAGCTGATTTGAACCGGAAACTGAGGAAGCAGACAACCAAAACAAGTAATATTCATACACAGAATTTGACTTTTGCAGTTATTTACGATTGTTAATAATGGAGTCCACCCTCGAACAACATCTCGATGATACCATGAAAAATCCAGCAGTTGTCGGTGTGCTTTGCACGGATCAACAAGGACACAACCTGGGCTGCCGCGGCTCCCTGTCTGATGAACATGGCGGTGTTGTGTCAGTTTTGGCCAAACAAGCTGGCGCTCTTACTAAAGACCCAACAGACAGTCCGACTGTGTGTCTGGAATCTGAGTCAGGaAACATTCTGGTGAGGAGTCATGGCACCATCACAGTAGCAGTTCACAAGATAGCATCTTGAAGACAACACGACTCACTGAGGAATTTTTATTGTAAAGAAATGTACATGTCAACAGGAACATTAGTATGATCGCACAATCTGAATTGACTTTGAGAAAGATCTGGTGTTTCCACATGTCTGTTGTCCTTTCTATATTATCCCATAATTAAACATACATGGTCCTTTTCTAATAAA

Function

symbol description
lamtor5 Predicted to contribute to guanyl-nucleotide exchange factor activity. Predicted to be involved in cellular response to amino acid stimulus and positive regulation of TORC1 signaling. Predicted to act upstream of or within negative regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be located in cytoplasm. Predicted to be part of Ragulator complex. Predicted to be active in lysosome. Orthologous to human LAMTOR5 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 5).

NR:

description
ragulator complex protein LAMTOR5-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0019079 viral genome replication biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16344 LAMTOR5, HBXIP; ragulator complex protein LAMTOR5

RNA

RNA id representative length rna type GC content exon number start site end site
TU69870 False 570 TUCP 0.42 4 22842066 22846938
XM_039801980.1 True 570 mRNA 0.43 4 22842044 22846916

Neighbor

gene id symbol gene type direction distance location
LOC120559530 LOC104964419,LOC104927136 coding upstream 13496 22826631 ~ 22828548 (+)
LOC120559125 NA coding upstream 18401 22811870 ~ 22823643 (+)
mmp9 mmp9 coding upstream 30573 22806923 ~ 22811471 (+)
adora1b adora1,LOC103368126,LOC101166301,LOC102200284,LOC101484151 coding upstream 46062 22791665 ~ 22795982 (+)
cpne5a NA coding upstream 116452 22653501 ~ 22725592 (+)
slc16a4 slc16a4,LOC102787232 coding downstream 1047 22847985 ~ 22877262 (+)
slc6a17 slc6a17,LOC104944562 coding downstream 72836 22919774 ~ 22942875 (+)
ngrn NA coding downstream 184358 23031296 ~ 23033104 (+)
sypl2b LOC104926818,LOC104942234,LOC103367903 coding downstream 210111 23057049 ~ 23061335 (+)
gpr61 LOC104942230,LOC103367872,LOC101482146,LOC102303595,LOC100709777 coding downstream 252615 23099553 ~ 23104095 (+)
G52294 NA non-coding upstream 79490 22750063 ~ 22762554 (+)
G52288 NA non-coding upstream 112489 22726597 ~ 22729555 (+)
G52287 NA non-coding upstream 115913 22725873 ~ 22726131 (+)
G52272 lhfpl5,LOC102777996 non-coding upstream 210900 22630594 ~ 22631144 (+)
G52185 NA non-coding upstream 357943 22480543 ~ 22484101 (+)
G52342 rbm15 non-coding downstream 37111 22884049 ~ 22888687 (+)
G52379 ahcyl1,LOC104942237 non-coding downstream 162239 23009177 ~ 23020008 (+)
G52364 nfya non-coding downstream 173868 23020806 ~ 23023328 (+)
G52403 atp5f1 non-coding downstream 293972 23140910 ~ 23192988 (+)
G52461 NA non-coding downstream 374988 23221926 ~ 23246504 (+)
LOC120559933 NA other upstream 279523 22562154 ~ 22562521 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other upstream 281716 22556329 ~ 22560328 (+)
LOC120558641 LOC103363734,LOC104967523 other upstream 747154 22090197 ~ 22094890 (+)
avpr2aa avpr2,LOC105897269 other upstream 781399 22046763 ~ 22060645 (+)
G51926 NA other upstream 937967 21903542 ~ 21904077 (+)
atxn7l2b kcnc4 other downstream 144314 22991252 ~ 23068479 (+)
tmem201 tmem201,LOC102777799 other downstream 899427 23746365 ~ 23765165 (+)
ctnnbip1 ctnnbip1 other downstream 944509 23791447 ~ 23814406 (+)
LOC120559118 LOC102791662 other downstream 2093857 24940795 ~ 24945320 (+)
G52871 LOC104956590 other downstream 2106504 24953442 ~ 24957330 (+)

Expression


Co-expression Network