G53782 (LOC103356136,LOC104946517,LOC101486029)


Basic Information

Item Value
gene id G53782
gene name LOC103356136,LOC104946517,LOC101486029
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 28500587 ~ 28502913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71885
AGGTGACAGAAAGCTCcagttttatttacattatcattcatacattcatacagTATTACAGTCGTTGAGTCTCTTTGGTTTTTGGCCTCTGCAAATCATACACACATGAATTGACActtaaaaaataacattaaaaggtggaataaaacaatatattaacttaaaacaatcaaattgtttaatttttttttcaacaattttcCCACCCTACAAAATTATCTCTCAACTATGCAGTTGTTCATTCCACGAAGCGTGCTGTGAGTCCATATAGTTCACTTTGACAGTCACACTAAAATCCGAAATTAACACCTGGATGTAAAAAGTCCAGTCTTATTTAtgcctgcacaaacacacactaaaacCATTACAACCATGTCTCTACATCAACATTAGGTATCGGATTAAGATGATAGAGATGATGAAAGTACAACCTGAAATGGCACCAAGAATCAGAAACCTTCCTGGGATGTGTGCACACTGTGGAGTTGTGTTGTAGTGGTTTTACACAATGGAAAAGCAAATTAGTAAGACTAGTGGAGAGAAAACCCAACCTGTTCAGAATTTGACATACAGAATATATTAATATCTGGACGTGCTGTATAGTATCAAATCTATCAGcgaaaatgaaatgttaaaaacagTTTTGATGAATTTCTTTTTCCATGCTTGCTCCCTCCCTGAACTACATGACTCAGTAGATTCGGCAAAGATGTGTAAAGATCATCATGTatgataaattaaaaaaacacaagtctTCTGTGTATTCAGTTCAACTTTTGTCAATTAATTTACTTTCCTTTTATATAGCCTACGTTGACAATCACAGGGAGACCCTTTGAGCGCAAATCAAATCCTCGTTATTCACCACGCTCCACATCCTGAGCAGCTCCTGCGCGCTCAGTTTGTGCACCACGATGAGGTTTTTGTAAAAGCATGGCTCGCTGTTCATGGGGCTCACCCTGCGTCTGGTGATGCCGAAGGTCCTGAAGCCCGGGTGCATCTCTGGGGCCAAGTGTAGCTTCTGCAGGCACATTCCCAAAAACACATCGTCAATGGGGTACAACTCCAGGTCCTCCGAGACCACGAAGAGCCTCCGGGCCAGCTGGGAGGACATCAGAAACCCCCCACCTCCGACATAAGGGGGATATGGCTTATCGTACAGCTCTTTGGGAATGTAGTATTTGCTCTGCCGGTTTCGGATGGGGATCGCCTTGGAGATGGTGTCCCCCACAAATAAGTCGGCCTCTTTGCGCTCCTCCACTCTGAAGCCGATGAGCTGCAGCAGGTTGTGCGGGTTCACAAACACATCGTCATCCCCTTTGAATATGAACTGGACGCCGGAGCAGTAAATGTTGAACCATTTGAGGAAGTTGACCTCTTTCAGGGTCAGGTTAAAGAAAGTGTCCATGAAGTCCCACTGGAGGATGTCCCCATAGATCATGTCCTCGTACTCGATCAGTTTCTGAAGGTTCTTGGTGTCTTTTCCAGTCGTCGGGCTTCCCAAAAGAAATAAAGTTTTGATTTTCTTCCCACCCACCGTGTGCTCCTTGCCCCAGGTTTTACGCACAGCCTCCCGCCTGTCGTGCTGCTCGATAACGGACTTGACCACCATGAGGAGTTGCACCTCTCCATCCGCGCATTTCTCCGGGTGGTTGATGAGCATGGGGAAGTACCTGCAGTGTCTGTGCAGAACAAACTGGTGAAATCTCGGGTCCAAGCGCCGAAACCAGTCCTTGGTCCTCACCGACGCGTCCTCACTGCAGTTGAGAACCTGCGCGTCCCAGGAAGCAGGAGTCCCGTTGGAGACCCGCTGCGCATCCAGTCCGTGGCTAAGAACTGGAGACTCGGAGCTCCCCAAACTATTTTTCAGGACTCCCTTCTTAAATGAAAAACACTCGGAGTCGCACCAACCGGCATCCTTCATACGTTTAACTCCCACTCCGTCCTTCTCTGCCAGTTTCAACTTGTGGATCATGAGAAAAGAGGCAAAGACCAGAGACAGGCTCAGCAAGGGTTTCAGCAGACCGACCCGCTTCCTCCGGAAACAGTGATCCATGGCTCTCACTGCGGCGCCCAGAGACCCTGAGATGCTGGACCCTTTGCCTTCATAGTGTTTCACAACTGTGCGCCCGAGTGGAGCCCATCACCGCCGTCCCTGCTCATTTGGACACCAGAGGTTGCGTCCTCGGCTACGTGAGAGCGCTGACCCCGGGGCCCCTTTTGCCCATGACGGCGCTCAGTGGAGTCGCACATCGCTTCTTGGTGCAGTGAAGTGATGCAGGATACCAAACGTCCTCAGGCtgcttctctgtcctctgtctcgGACT

Function

NR:

description
PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71885 True 2327 lncRNA 0.48 1 28500587 28502913

Neighbor

gene id symbol gene type direction distance location
cep104 cep104 coding upstream 111 28459161 ~ 28500476 (+)
LOC120559027 NA coding upstream 58204 28420529 ~ 28442383 (+)
LOC120558753 NA coding upstream 101506 28390403 ~ 28399081 (+)
LOC120559025 NA coding upstream 123416 28363176 ~ 28377171 (+)
soga1 NA coding upstream 196309 28199573 ~ 28304278 (+)
c5h1orf174 NA coding downstream 1573 28504486 ~ 28508540 (+)
nphp4 nphp4 coding downstream 9134 28512047 ~ 28697909 (+)
cfap74 cfap74 coding downstream 680413 29183326 ~ 29245568 (+)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC103044197 coding downstream 748061 29250974 ~ 29294158 (+)
LOC120559728 slc35e2b coding downstream 836793 29339706 ~ 29348037 (+)
LOC120558758 NA non-coding upstream 46312 28446442 ~ 28454275 (+)
G53770 NA non-coding upstream 175654 28324728 ~ 28324933 (+)
G53734 NA non-coding upstream 303831 28196546 ~ 28196756 (+)
G53696 NA non-coding upstream 342654 28156713 ~ 28157933 (+)
G53681 NA non-coding upstream 554732 27945651 ~ 27945855 (+)
G53884 NA non-coding downstream 452647 28955560 ~ 28955816 (+)
G53885 NA non-coding downstream 461723 28964636 ~ 28970345 (+)
G53897 NA non-coding downstream 602881 29105794 ~ 29106722 (+)
G53948 NA non-coding downstream 845621 29348534 ~ 29349109 (+)
G53956 NA non-coding downstream 869896 29372809 ~ 29373489 (+)
LOC120558754 NA other upstream 84840 28407271 ~ 28415747 (+)
G53775 NA other upstream 154671 28341922 ~ 28345916 (+)
casp9 LOC104954971 other upstream 177808 28319637 ~ 28322779 (+)
bsna bsn,LOC102782891,LOC106513106 other upstream 356786 27954399 ~ 28143801 (+)
LOC120559343 NA other upstream 905178 27585525 ~ 27595409 (+)
nadka nadk other downstream 793691 29296604 ~ 29323242 (+)
plekhm2 plekhm2 other downstream 1021110 29524023 ~ 29545886 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other downstream 1045831 29548744 ~ 29567773 (+)
G54103 LOC103366252 other downstream 1249533 29752446 ~ 29758010 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other downstream 1266939 29769852 ~ 29782937 (+)

Expression


Co-expression Network