G53897


Basic Information

Item Value
gene id G53897
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29105794 ~ 29106722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72020
ggcgtctttgtaggacgagcagctgcttgcaatatgtcccattcattacaatggggaaataccgcagctagctagctacactgtcgccataactaaattatatttacagtttgaatttcgtcacgccacttatataacatcattccccaatgtcttataaagctaaccgttgtgtccgatttgattttaaggcatttttatgaacgcgaggcgtctttgtaggaccagcagctgcttgctatatgtcccattcattacaatggggaaataccgcagctagctagctacactgtcgccataactaaattatatttacagtttgaatttcgtcacgccacttatacatcattccccaatgtcttataaagctaacagttgtgtccgatttgattttaaggcatttttatgaacgtgaggcgtctttgtaggaccagcagctgcttgctatatgtcccattcattacaatggggaaatacgcCAGTAGGCTAGCTACacgtcgccataactaaattatatttacagtttgaattttgtcacgccaattatataacatcattacccaatgtcttataaagctaaccgttgtgtccgatttgattttaaggcatttttatgaacgcgaggcgtctttgtaggaccagcagctgcttgctatatgtcccattcattacaatggggaaataccgcagctagctagctacactgtcgccataactaaattatatttacagtttgatttCGTACACCAACTtatacatcattccccaatgtcttataaagctaacagttgtgtccgatttgattttaaggcatttttatgaacgctggtatgcgtctttgtaggaccagcagctgcttgctatatgtcccattcattacaatggggaaataccgcagctagctagctacactgtcgccataactaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72020 True 929 lncRNA 0.40 1 29105794 29106722

Neighbor

gene id symbol gene type direction distance location
nphp4 nphp4 coding upstream 407885 28512047 ~ 28697909 (+)
c5h1orf174 NA coding upstream 597254 28504486 ~ 28508540 (+)
cep104 cep104 coding upstream 605318 28459161 ~ 28500476 (+)
LOC120559027 NA coding upstream 663411 28420529 ~ 28442383 (+)
LOC120558753 NA coding upstream 706713 28390403 ~ 28399081 (+)
cfap74 cfap74 coding downstream 76604 29183326 ~ 29245568 (+)
gnb1a gnb1,ol-gb1,gnb1a,LOC107385217,LOC103044197 coding downstream 144252 29250974 ~ 29294158 (+)
LOC120559728 slc35e2b coding downstream 232984 29339706 ~ 29348037 (+)
mad2l2 mad2l2 coding downstream 254276 29360998 ~ 29364410 (+)
tmem82 tmem82,LOC104921441 coding downstream 261733 29368455 ~ 29372181 (+)
G53885 NA non-coding upstream 135449 28964636 ~ 28970345 (+)
G53884 NA non-coding upstream 149978 28955560 ~ 28955816 (+)
G53782 LOC103356136,LOC104946517,LOC101486029 non-coding upstream 602881 28500587 ~ 28502913 (+)
LOC120558758 NA non-coding upstream 651519 28446442 ~ 28454275 (+)
G53770 NA non-coding upstream 780861 28324728 ~ 28324933 (+)
G53948 NA non-coding downstream 241812 29348534 ~ 29349109 (+)
G53956 NA non-coding downstream 266087 29372809 ~ 29373489 (+)
G53960 NA non-coding downstream 276030 29382752 ~ 29383131 (+)
G53962 NA non-coding downstream 277228 29383950 ~ 29384191 (+)
G53963 NA non-coding downstream 301989 29408711 ~ 29409113 (+)
LOC120558754 NA other upstream 690047 28407271 ~ 28415747 (+)
G53775 NA other upstream 759878 28341922 ~ 28345916 (+)
casp9 LOC104954971 other upstream 783015 28319637 ~ 28322779 (+)
bsna bsn,LOC102782891,LOC106513106 other upstream 961993 27954399 ~ 28143801 (+)
LOC120559343 NA other upstream 1510385 27585525 ~ 27595409 (+)
nadka nadk other downstream 189882 29296604 ~ 29323242 (+)
plekhm2 plekhm2 other downstream 417301 29524023 ~ 29545886 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other downstream 442022 29548744 ~ 29567773 (+)
G54103 LOC103366252 other downstream 645724 29752446 ~ 29758010 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other downstream 663130 29769852 ~ 29782937 (+)

Expression


Co-expression Network