G54057


Basic Information

Item Value
gene id G54057
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29568175 ~ 29569618 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72232
TGAATAGTGAAATGTATTGGGCCTGGCTAGTTTCGGGGGAAAACTCAACAGCCTCTTGGCCAAAATGTAACACTCTCAAAGTTACAATATGAAGACACATCCATGCCAGTACTGCAATTTGTTGTGTTTATAGTGGCTACCTACAGTTGCAGCATGAATTGTTCATTCTATCTGTTTTCTGATTCTGTTCAGTGTATTTAGAATTTTACACAGAGATGACACCTGCAGCAGTGTGCGTCAGACCCATCCTGAGGTTTAGTAGAAAGTGTGGACCCAAGACCTAATAGTGTTACATTGATGTCATATGTTTTTAATGAGATTAAAAAGTAACCTAATCCCACCTAAAAGAATCTTGTTCAGCCTGCTGTTAAGTTACTCTTAACAGAAGGGGTACTCCTGTGATCTAGTATTGCGCTTCCTTAAAGTTGGAGGACAATGCAGCAAAGGCCCAAATATCCTGACTAAGTCCTGGTACGGGTCAAACTTAAAAAACGCTGGCTCCTACATTTCCTATAATGAAACGTCTATTGTAGAGTTGCGAAATGTCTGGTTCATTGTCTTCAAGTTGAatcaataatacaaaacataAGTAATCATGCTAGAAAATATCAGGATATTTTAGTCAAAAATACTTCCTgtatacataaaaacataagtAAAGTTAAGTTAACTCCCAAGGTGCATTTCAGTAAGAAACATCCAATCACTGACCTGAAATTCTTTGACACATAACTCTGGGTCACTTTTGGCTAAATTTGGCAATTATGGCCTATATTTGGAGCCATCTGCCAAGTTGAAATGTGTCAAACTAATGGCCATAAACCTACAGTATCCTTACATTGTCCAGGACACTCTATGTTGAGGAAAATTAAGGATActattgaaatatattttgtaGCTTGATTAGACTCCCTGCCTGGTAAATACCTACGTCTTTCAAACTCCACTTCCAAGCCGAGGTAACTTCGATGACATCATCtgggttattttctcagacttgacAAAGTCTGTGTATTCCTCCCCATCATGAGTAAACTGATCTATATGTGTAAAATCAGAGGAGTGCCCCTTTGAGTTTACATTGTGGTTGTTTTCTTAATGATGACTTCTGACTTAAGGTCAGGTTAAGTGcaccttttttttcaatgttaatTTTATAAAAGGCTTTGATTGTGAGCTTTTCTTATTACATTGATTATCTGTTGTCTTCACTGTGATGAAGAACATCTGCAAACATCTGCACCTTTGTCTGCAATGTatgcaatgcacacacacatatactgtacgtgTTTACTGTCCTTGGATGCTGAGCATGTCCGTCTTTTTTACTTGAACGCTCTGCAGAGCTGCTGCTGTAGGATACTGTAAACAGCAGTGAAATAGTACCTCAATTTAGGACATATTTTCTGTGTGAGCTGTTTTGCATTTAAGATCTTTTAGAcca
>TU72233
TGAATAGTGAAATGTATTGGGCCTGGCTAGTTTCGGGGGAAAACTCAACAGCCTCTTGGCCAAAATGTAACACTCTCAAAGTTACAATATGAAGACACATCCATGCCAGTACTGCAATTTGTTGTGTTTATAGTGGCTACCTACAGTTGCAGCATGAATTGTTCATTCTATCTGTTTTCTGATTCTGTTCAGTGTATTTAGAATTTTACACAGAGATGACACCTGCAGCAGTGTGCGTCAGACCCATCCTGAGGTTTAGTAGAAAGTGTGGACCCAAGACCTAATAGTGTTACATTGATGTCATATGTTTTTAATGAGATTAAAAAGTAACCTAATCCCACCTAAAAGAATCTTGTTCAGCCTGCTGTTAAGTTACTCTTAACAGAAGGGGTACTCCTGTGATCTAGTATTGCGCTTCCTTAAAGTTGGAGGACAATGCAGCAAAGGCCCAAATATCCTGACTAAGTCCTGGTACGGGTCAAACTTAAAAAACGCTGGCTCCTACATTTCCTATAATGAAACGTCTATTGTAGAGTTGCGAAATGTCTGGTTCATTGTCTTCAAGTTGAatcaataatacaaaacataAGTAATCATGCTAGAAAATATCAGGATATTTTAGTCAAAAATACTTCCTgtatacataaaaacataagtAAAGTTAAGTTAACTCCCAAGGTGCATTTCAGTAAGAAACATCCAATCACTGACCTGAAATTCTTTGACACATAACTCTGGGTCACTTTTGGCTAAATTTGGCAATTATGGCCTATATTTGGAGCCATCTGCCAAGTTGAAATGTGTCAAACTAATGGCCATAAACCTACAGTATCCTTACATTGTCCAGGACACTCTATGTTGAGGAAAATTAAGGATActattgaaatatattttgtaGCTTGATTAGACTCCCTGCCTGGTAAATACCTACGTCTTTCAAACTCCACTTCCAAGCCGAGGTAACTTCGATGACATCATCtgggttattttctcagacttgacAAAGTCTGTGTATTCCTCCCCATCATGAGTAAACTGATCTATATGTGTAAAATCAGAGGAGTGCCCCTTTGAGTTTACATTGTGGTTGTTTTCTTAATGATGACTTCTGACTTAAGGTCAGGTTAAGTGcaccttttttttcaatgttaatTTTATAAAAGGCTTTGATTGTGAGCTTTTCTTATTACATTGATTATCTGTTGTCTTCACTGTGATGAAGAACATCTGCAAACATCTGCACCTTTGTCTGCAATGTatgcaatgcacacacacatatactgtacgtgTTTACTGTCCTTGGATGCTGAGCATGTCCGTCTTTTTTACTTGAACGCTCTGCAGAGCTGCTGCTGTAGGATACTGTAAACAGCAGTGAAATA

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU72232 True 1444 lncRNA 0.38 1 29568175 29569618
TU72233 False 1382 lncRNA 0.38 1 29568175 29569556

Neighbor

gene id symbol gene type direction distance location
ddost ddost,LOC102799190 coding upstream 44723 29517679 ~ 29523452 (+)
zbtb17 zbtb17 coding upstream 50985 29502226 ~ 29517190 (+)
hspb7 hspb7 coding upstream 67714 29496591 ~ 29500461 (+)
fam131c fam131c coding upstream 94871 29460638 ~ 29473304 (+)
epha2b LOC104966854 coding upstream 119228 29425476 ~ 29448947 (+)
arhgef19 arhgef19 coding downstream 2389 29572007 ~ 29593052 (+)
mmp23ba mmp23b coding downstream 171940 29741558 ~ 29751592 (+)
LOC120559844 atad3a,LOC103366266,LOC102783555 coding downstream 242545 29812163 ~ 29821637 (+)
otud3 otud3 coding downstream 270586 29840204 ~ 29846246 (+)
trim33 trim33 coding downstream 284352 29853970 ~ 29891523 (+)
G53963 NA non-coding upstream 159062 29408711 ~ 29409113 (+)
G53962 NA non-coding upstream 183984 29383950 ~ 29384191 (+)
G53960 NA non-coding upstream 185044 29382752 ~ 29383131 (+)
G53956 NA non-coding upstream 194686 29372809 ~ 29373489 (+)
G53948 NA non-coding upstream 219066 29348534 ~ 29349109 (+)
G54079 mib2,LOC106936770,LOC103150490,LOC106926266 non-coding downstream 66909 29636527 ~ 29771801 (+)
G54094 LOC104942893 non-coding downstream 133630 29703248 ~ 29707067 (+)
G54101 ubiad1 non-coding downstream 167423 29737041 ~ 29739244 (+)
G54107 LOC102235830,LOC104955916,LOC108233146 non-coding downstream 189426 29759044 ~ 29760415 (+)
G54108 NA non-coding downstream 191458 29761076 ~ 29765810 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 402 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 22289 29524023 ~ 29545886 (+)
nadka nadk other upstream 244933 29296604 ~ 29323242 (+)
LOC120558754 NA other upstream 1152428 28407271 ~ 28415747 (+)
G53775 NA other upstream 1222259 28341922 ~ 28345916 (+)
G54103 LOC103366252 other downstream 182828 29752446 ~ 29758010 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other downstream 200234 29769852 ~ 29782937 (+)
agrn agrn other downstream 644992 30214610 ~ 30486565 (+)
micos10 minos1 other downstream 1070142 30639760 ~ 30642621 (+)
G54383 NA other downstream 1120034 30689652 ~ 30690404 (+)

Expression


Co-expression Network