G54079 (mib2,LOC106936770,LOC103150490,LOC106926266)


Basic Information

Item Value
gene id G54079
gene name mib2,LOC106936770,LOC103150490,LOC106926266
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29636527 ~ 29771801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72262
GGCAGCCATAATGATACAGGTGCTTTATATAAGCTCAGCTAATGAGGGGGTTTGGTCTAGTTAAGGTGCGTTCAAGAACCGACAGGGTGCAAAGTTTACTGCACACACCACTACATAAGCAGCCGTGGCTGGCCTGGGTCCTCCCgtaacgttagctgttagctaacgcgtgttagcatgcttgcGTTAGCACTAGTCGGGATCCCTTCCCCGGCTGTCTCAATTCTTTTTGCGAGTTACTAACTTGAGTACTCTATATTATTTAATGCGAGCACATGAATGTagaaatgactgaaaatgcccatccctactaCGTTAGCTGTGATAGAAATTTATGAAACTCAACGCTTAGCTAGCTACCTGTTAGGAGGAAATTAGCTAACCCTGCGTCCTTTTGGTTTGGGTTAGCTTGGGATCACACTGGGATCACTTCACCCGTCTGCAGTAAGGCTACATCTATGAGACAATTTCGAAATTTCCCTTCAGAACATGctaaaaaagttgaataattaaaaacacataaaagcaATCTACACCATGTCCTTAGAAAACAGTTCCATATTTATTGCAAAATATTTTTGTAcagaataaaactgaaaaaacatcAACAGAGGAGGAATGGACAGTAAGGCCAACATCATAACTCCAAGAGCTGAACTGTACAAACACCAATAATAACATTTGCTGCTTTGATAGTTTTTATACATAAATTGTTTCGCGCCCTCACAGCGACCTCTTtaagggggagaaaaaaagaattcaaACATATTCCCCATTTTTCTAAAACTTTATTGCCTTTGCCTGTAAACCCATCAACATAGAACACCAATGGACAATccttaaaatgttgaaatttctgTAAGAAACTTGTCCCTTGATTGATAATGTttcacaaaatacaaatatatatacttgTAAAAAGCTCCAAACGATATGGGACTGATAATATTTTAGAAGTGTTGTTTCACTCGTCACTGAGAACATGAGAGAGCACTACAACTAAAGTTAGAGGCTAACACCATTAGCTCAACTTCTAACACCAGTAACCAAGTGTGCTGAGAGAACACTTCTTATtttgaacaaaataaaatgtgaatgtttgcTTTTAGTTTACTTCACACTGCTGGAATAATTGAACCCTCACTTGAGCTTTGAGGGGTTTAGCATAGTGCGTCTAGATAAATTCGGGCGTGCATGCCCATGCACATCCTCATGCGATTTGGCACAGATGTAAAAGTTCTTTCCTCAAAGTAAAACTCGTGGTAAACGCGTCTCAGTCTCTTCAGCTCCTTCTCttacatctttttttctttacacatAAAAAAGGCAGAGTGAGACAGGATACATTTTTCTTCCCCGACATTCAAATGTACATCTTTAACATTGGCTCTCCCAAACTTTGGGATCTAacgaagacaaaaaaaaatcctgtctCTGGAAGTTTAttatataaaattaaattaaataacgATTAAAATagataggatttttttttctcatatgcATAAGCCCTTcaagaaaacacaacacaccaaaacattaaaaaaggacGAAGGTGATGTACAATCCAGAAGAAAAGGGGGTTTCTTCTGAAAGGACTCCATTGGGAAGGTAGACGTGGAACTACAGGTGCAACACAACAATGTCATGTTTTTGCCCTTCTGATTCTATATTATACAATAGATCTGGTGGACGAATAACAAAACACGAGTATCCGCTGCTTGTTGGGGTCTCTACACCAATTAGATGACAGACAGACTGTGGTCTTCAGACACAAACAGGCTGACCAACACAATGCTTTTAAGTTGACTGCTTCttcggctttttttttttggaggatCATGTCAGTTTTGTTGCAGAAACTATTTTTGCAAACATTAATTTCACTTATGAGTGACATTTTAAAGGTTGATAAAGTGAATTGTGAGACACTCACTATGCACAACTTTATTAATAATCTTGTCTTTCAGTGACCCTCCAGTAAAATGATCAGATACACTGTAGCTctgtaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagagagagggg
>TU72263
gagagagagagagggggggggggggcgcTCTTTAACCTGTTATGGATATCACAAGTGTTTTCAATGATCTGATACCCTGAGTAGAGGACATAGGCTTGGGGTGAAGTTCAGTAGAAACAAAAACACCAACTAAAAGAAAAGGACATTACTAAGTAATACCACCTTtcacacataaataaaaacctgtACTGATCGGTACAttaaaaaccacaaatgtaaccagagagaaataaaacaacGACAAATCACCCATGACAACACAGTCGTTTTCAGCTTTACAATATGCATATATTCATgcatatatatagtgtgtatttCCCCTTGCATACAGGCAAGTGGTTGGGGACTATATAGAGAGCCTTTAGTTATACCAACTCCCTCTGCAGAGACTAACACTGATTATTAAGAGACTGGTACAAATCAGAGCAAACGTAATTCACAGGACAGGCTGAGGGGCGAGAAGAAGGGGACTGATTCTGTGCAGCCTTGTAAACAGAGGAGGCCAGACAGCCAGAGAGGATGATGGGTAACAGACATCCACTTAAAGCAGCAAAGATAGGACGGATTACATGAGGTGGAGGCTGAGTGGGAACGAAGAAAAGAATAGGTGGGGGGCCTTTTTCTCCCAGCTTACCATCGAAGTACTTAAAGTGGCAGCATCACCTCACAACTTTGCCTCGTCTGCTTCCCGTTGGTCTCAGTGGAACATCAGTTCTGACGCCGAAAATTAAGTTTACGTTATCGTCATGTTTCTGCCTGCACTGCTCAAGAGGGAAACTACTCAAAATGTAACAGACAGTGGACTCTCAGCGATGTAACACAGCGTCTTATGTTAAAGAAACCTATGGGCTGAGTGAGTATTTGACaatgggtggggtggggtgggggggagggatGAGAATGAGGGTGTGACTTCAAAAAGGTACTGTAACAGCTGCCCACCCCCACTTCTCTCCAGCCCCCTCCGACATCCTTTTGGGGGTTTTAAGAGCTGAGAGGACAGAAAAGCTCAGACGAATAACTGGATGCGCTCGCGGATGGTCTGCCGACAGATCGGGCAGGTCTTGAGCGCGGCGCTGCAGTCGATGCAGGAGGCGTGTCCGCACTGGAAGACCAGCTTGATGTGGTTGTCTATGCAGATGGGGCAGGTGATTCGCTCCTCCATCTGACGGTAGCGAGACTGCAACTGCTCCAGCAGGTTGTGCTGCTCTGAGTTCTCGGTGCCGGGGCTGCAGTCCACCTCCGTTTGGTCTGTGGACCAAACATGGATGATGTCAAACCAATGAAGAACTGAGTTGACAGACTTAGACAATAACTGTAGGTTATTGTTTTCTGATGTTAATAGAAGTCAAATGTATGAAAGCCGTGCAAGATGAGACTGTCCTGGTGTTCAAAGATAATAAGGCTGCAtagcagtccctccaggatttcacgATGTCgccaattcacgcaaattcaagctgtatacattttaacatcaatgtacgctgtaacgttttttcactataaagtcactgaagcggctgctgtttc

Function

symbol description
mib2 Enables identical protein binding activity. Contributes to ubiquitin-protein transferase activity. Acts upstream of or within several processes, including melanocyte differentiation; protein autoubiquitination; and regulation of receptor internalization. Located in cytoplasmic vesicle and perinuclear region of cytoplasm. Is expressed in inner ear; mesenchyme pectoral fin; and pectoral fin. Orthologous to human MIB2 (MIB E3 ubiquitin protein ligase 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72262 True 2064 lncRNA 0.39 2 29682249 29771801
TU72263 False 1533 lncRNA 0.47 2 29636527 29685909

Neighbor

gene id symbol gene type direction distance location
arhgef19 arhgef19 coding upstream 43475 29572007 ~ 29593052 (+)
ddost ddost,LOC102799190 coding upstream 113075 29517679 ~ 29523452 (+)
zbtb17 zbtb17 coding upstream 119337 29502226 ~ 29517190 (+)
hspb7 hspb7 coding upstream 136066 29496591 ~ 29500461 (+)
fam131c fam131c coding upstream 163223 29460638 ~ 29473304 (+)
LOC120559844 atad3a,LOC103366266,LOC102783555 coding downstream 40362 29812163 ~ 29821637 (+)
otud3 otud3 coding downstream 68403 29840204 ~ 29846246 (+)
trim33 trim33 coding downstream 82169 29853970 ~ 29891523 (+)
slc66a1 pqlc2 coding downstream 122204 29894005 ~ 29902494 (+)
nr1h5 LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965 coding downstream 132058 29903859 ~ 29927978 (+)
G54057 NA non-coding upstream 66909 29568175 ~ 29569618 (+)
G53963 NA non-coding upstream 227414 29408711 ~ 29409113 (+)
G53962 NA non-coding upstream 252336 29383950 ~ 29384191 (+)
G53960 NA non-coding upstream 253396 29382752 ~ 29383131 (+)
G53956 NA non-coding upstream 263038 29372809 ~ 29373489 (+)
LOC120558370 NA non-coding downstream 220326 29992127 ~ 29994409 (+)
G54221 NA non-coding downstream 322251 30094052 ~ 30103983 (+)
G54229 NA non-coding downstream 358266 30130067 ~ 30131917 (+)
G54348 ampd1 non-coding downstream 757520 30529321 ~ 30591468 (+)
trnar-ucu_12 NA non-coding downstream 760299 30532100 ~ 30532191 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 68754 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 90641 29524023 ~ 29545886 (+)
nadka nadk other upstream 313285 29296604 ~ 29323242 (+)
LOC120558754 NA other upstream 1220780 28407271 ~ 28415747 (+)
G53775 NA other upstream 1290611 28341922 ~ 28345916 (+)
agrn agrn other downstream 442809 30214610 ~ 30486565 (+)
micos10 minos1 other downstream 867959 30639760 ~ 30642621 (+)
G54383 NA other downstream 917851 30689652 ~ 30690404 (+)
LOC120559580 LOC101486775 other downstream 1026392 30798193 ~ 30837415 (+)
znf341 NA other downstream 1370469 31142270 ~ 31159511 (+)

Expression


Co-expression Network