G54107 (LOC102235830,LOC104955916,LOC108233146)


Basic Information

Item Value
gene id G54107
gene name LOC102235830,LOC104955916,LOC108233146
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29759044 ~ 29760415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72305
CTGGCAGGAAGGGCTGCTTCATGGTTTCCATCAAACTCTTCAGGTCATGTTCTACATAGTTCATCACGATGTAGATCTTGTCCATATTACTTCCCACAACTATTTCCCTTACTGTGACGATGTTTGGGTGCTGAGCTTTCAGGATTGTATTGATTTCTCTTAAAGAGGTAATGGGGAagccctccttctccttctccatctttAATCTTTTCAAGGCCACAATTTCATCCGTCTTTTTGTCCTTGGCTCTGTACACCACACCATAGGTTCCCTCTTCTATTCGGTTCAAGCACTGGAATTCCTCAACACTGCGACAACCCTGTAAAGCAGGCAGATATTTGGGCAGCTCCTTTTTCAGCTCCACAGGTGAAATTGGAGGAGAGTCTGGGATATAGTTCTCTTCGGGGGTGGGGGAGCGAGAATGAGTTTGAGAGTGAGGCGTGGGGTCACCATCTCCTGcatcctcctcgtcctcctcctcctcctcttcctccatgtCCTCACCGCTCTCTTCTGAGTCGTGATCGAAACGGGACTCTGGCACTG

Function

NR:

description
cyclin-dependent kinase 11B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72305 True 546 lncRNA 0.49 4 29759044 29760415

Neighbor

gene id symbol gene type direction distance location
mmp23ba mmp23b coding upstream 7452 29741558 ~ 29751592 (+)
arhgef19 arhgef19 coding upstream 165992 29572007 ~ 29593052 (+)
ddost ddost,LOC102799190 coding upstream 235592 29517679 ~ 29523452 (+)
zbtb17 zbtb17 coding upstream 241854 29502226 ~ 29517190 (+)
hspb7 hspb7 coding upstream 258583 29496591 ~ 29500461 (+)
LOC120559844 atad3a,LOC103366266,LOC102783555 coding downstream 51748 29812163 ~ 29821637 (+)
otud3 otud3 coding downstream 79789 29840204 ~ 29846246 (+)
trim33 trim33 coding downstream 93555 29853970 ~ 29891523 (+)
slc66a1 pqlc2 coding downstream 133590 29894005 ~ 29902494 (+)
nr1h5 LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965 coding downstream 143444 29903859 ~ 29927978 (+)
G54101 ubiad1 non-coding upstream 19800 29737041 ~ 29739244 (+)
G54094 LOC104942893 non-coding upstream 51977 29703248 ~ 29707067 (+)
G54057 NA non-coding upstream 189426 29568175 ~ 29569618 (+)
G53963 NA non-coding upstream 349931 29408711 ~ 29409113 (+)
G53962 NA non-coding upstream 374853 29383950 ~ 29384191 (+)
G54108 NA non-coding downstream 661 29761076 ~ 29765810 (+)
LOC120558370 NA non-coding downstream 231712 29992127 ~ 29994409 (+)
G54221 NA non-coding downstream 333637 30094052 ~ 30103983 (+)
G54229 NA non-coding downstream 369652 30130067 ~ 30131917 (+)
G54348 ampd1 non-coding downstream 768906 30529321 ~ 30591468 (+)
G54103 LOC103366252 other upstream 1034 29752446 ~ 29758010 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 191271 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 213158 29524023 ~ 29545886 (+)
nadka nadk other upstream 435802 29296604 ~ 29323242 (+)
LOC120558754 NA other upstream 1343297 28407271 ~ 28415747 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other downstream 9437 29769852 ~ 29782937 (+)
agrn agrn other downstream 454195 30214610 ~ 30486565 (+)
micos10 minos1 other downstream 879345 30639760 ~ 30642621 (+)
G54383 NA other downstream 929237 30689652 ~ 30690404 (+)
LOC120559580 LOC101486775 other downstream 1037778 30798193 ~ 30837415 (+)

Expression


Co-expression Network