G54344


Basic Information

Item Value
gene id G54344
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30612145 ~ 30647078 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72627
AAAGTACATGAGAACCTCTGTCCGTGGTTCAACTGAAACCCGGTGATCTCCAAAGTTGAAATTAATTTAGACTGTAACTTAATGTGCAGAGGCACAACAGCTCACCCACCATGTCTCCAGCGCACAATAACTGGTAGCCTGATTTCATAATGCTTTTTTCAACTGAATTTCTAATACTCTTCTCCTTCTTTAAGTTaaatttgttttgttatatCTGAAGTTTCAATGAACCTTCACTAAGCAAAAAAAGcacacattacatacagtatatttcaaCCCACAGGTTTGGGATGCATATCAGTATTATTTCTACTAGAAAAGAAAGCCACCCTAAGATTGTTCTGAATGTTTTGGTGGTTTGGCTGGGAACAGAGGATGCAtctaatttttttcattttgcttGTAGTTTTTAGGCACCTTATTCTTACTTTATTCAATATTAGCAGATTGAGTTTCAatggaaaaaagcaaaaatatgtgcaagaaaaaaaaaaaaaaaaaaaaaaaaagtagtataaAAGAACTGTAGATATAAGATGCCACAAGGAACTCTGcacctggggaaaaaaaattgcTTTAGTGGAGCATGTGAATACCAAAAAGGTATCTAAAGGCTCCAGATTGGTAAAAGTAAATCCCATTAGATCAACTACCTTGACATTAACATACATcaatcacacactctctctctctcacacacacacacacacacacacacacaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72627 True 723 lncRNA 0.35 2 30612145 30647078

Neighbor

gene id symbol gene type direction distance location
ptpn11b LOC104956326 coding upstream 73024 30491366 ~ 30539121 (+)
angptl7 angptl7 coding upstream 445750 30162678 ~ 30166395 (+)
nr1h5 LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965 coding upstream 684167 29903859 ~ 29927978 (+)
slc66a1 pqlc2 coding upstream 709651 29894005 ~ 29902494 (+)
trim33 trim33 coding upstream 720622 29853970 ~ 29891523 (+)
vwa1 LOC103364336,LOC104966039,LOC104936677 coding downstream 22498 30669576 ~ 30679373 (+)
LOC120559603 ralgapb coding downstream 34711 30681789 ~ 30706780 (+)
LOC120559606 NA coding downstream 61328 30708406 ~ 30786785 (+)
LOC120559032 prex1 coding downstream 140449 30787527 ~ 30797132 (+)
LOC120558404 LOC101486300,LOC103364333,LOC102795726,LOC100703627 coding downstream 230471 30877549 ~ 30889907 (+)
G54368 NA non-coding upstream 9100 30598480 ~ 30603045 (+)
G54348 ampd1 non-coding upstream 20677 30529321 ~ 30591468 (+)
trnar-ucu_12 NA non-coding upstream 79954 30532100 ~ 30532191 (+)
G54229 NA non-coding upstream 480228 30130067 ~ 30131917 (+)
G54221 NA non-coding upstream 508162 30094052 ~ 30103983 (+)
G54462 NA non-coding downstream 224891 30871969 ~ 30872171 (+)
G54466 NA non-coding downstream 240214 30887292 ~ 30887495 (+)
G54500 ctnnbl1,LOC102783849 non-coding downstream 341034 30988112 ~ 30999107 (+)
G54523 NA non-coding downstream 513722 31160800 ~ 31164233 (+)
G54524 NA non-coding downstream 519024 31166102 ~ 31169205 (+)
agrn agrn other upstream 125580 30214610 ~ 30486565 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other upstream 829208 29769852 ~ 29782937 (+)
G54103 LOC103366252 other upstream 854135 29752446 ~ 29758010 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 1044372 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 1066259 29524023 ~ 29545886 (+)
G54383 NA other downstream 42574 30689652 ~ 30690404 (+)
LOC120559580 LOC101486775 other downstream 151115 30798193 ~ 30837415 (+)
znf341 NA other downstream 495192 31142270 ~ 31159511 (+)
hdac7a LOC103352821 other downstream 740729 31387807 ~ 31463330 (+)
G54596 NA other downstream 875243 31522321 ~ 31525714 (+)

Expression


Co-expression Network