G54348 (ampd1)


Basic Information

Item Value
gene id G54348
gene name ampd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30529321 ~ 30591468 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU72631
ATTCATTTCTGCGCCAAATAAGAGTGCATATCAAGTCTCATTTACAACTTACTGGTCAGAGTTTATGAGCATTAGCTCTGCCAAATCACAAAATCAACACAACTAGATAAGATCCTGCtgttaaaacaatgttgcaatgtaatcggaatcagaatcagctttattggccaggtttgcgtaaacaaacaaggaatttgactctggttaatctttgctctcaaagtacaacactcaccACTCACTGATAACATTACAAAATGCATCAATGGGGAAGCTACCACACAAAGGCACTTGTTATTTCAGattttatttcctttcattcttATACATGTTGTTTCTCCTCGTGGAATACACAGACTGCAGTGTACAAGTCAATTGGACATTGTGTTCAGATGTTATAGAGTCATGACATTTAGCAAAATGTTTCTTCCTCTAAAGGAGAGAACATCAGTGTGTTAGAAGGTGAGTTCCTTTAAGATTCAATTGTTACtgtgaaaaacaaatgtggAAACTTTTCACAATAGAGATGAGTTTTATTGGGTGTAAGTGGGATTTGAGAGTGTTTACTCAGACTTTAAACCCTCCTTGATGAGGTTGAGCTCATAGCACAGGGTCTCATAGCGATATGCCATACGGATCTGAGCCACATTGGTCTTACGGATGTCGTTGCCCTCTGGACCCTCCTTCAAGTAGTCTTTACCCAGGAAGTGGACCTTCTCCTGGAACACAGAAGACAAACACAAGCATGTTTCTCTATGTGGAACATGATGTGTAATCTCTTTGATTTAAGAGCAGCCTGTATGGGGTGAAGATAGAATCTGTGTGTCTTTGAGAGGATATAACATTAAGCTTTTACGCCCAGAAACATATCTACA
>TU72632
CAGACTAATAACTTTATTAAATTTGCATGACTGATGCACATTTTTTCCCTTCATTCTGCTGATACAGCTAAATGTCCATGCATCTAAACTTCTAAAGGAAACAACAGCCATCAGAAAACTACTTTTGGTACACAGTGTAAAATAAACAAGGCGCCAAATAAGAGTGCATATCAAGTCTCATTTACAACTTACTGGTCAGAGTTTATGAGCATTAGCTCTGCCAAATCACAAAATCAACACAACTAGATAAGATCCTGCtgttaaaacaatgttgcaatgtaatcggaatcagaatcagctttattggccaggtttgcgtaaacaaacaaggaatttgactctggttaatctttgctctcaaagtacaacactcaccACTCACTGATAACATTACAAAATGCATCAATGGGGAAGCTACCACACAAAGGCACTTGTTATTTCAGattttatttcctttcattcttATACATGTTGTTTCTCCTCGTGGAATACACAGACTGCAGTGTACAAGTCAATTGGACATTGTGTTCAGATGTTATAGAGTCATGACATTTAGCAAAATGTTTCTTCCTCTAAAGGAGAGAACATCAGTGTGTTAGAAGGGTGTTACCTCATGAGACAAGGCGCTCTGCAGAACACTGCTCCTGGAGATCTCACACATGTCGCAGGTACTGAGCTTGAAGACCTGGGCTGCAATGGCGTACTCTTCCATCAGGGGTCCTTGGTGTAGTGGAACTGCATGGGGTCGTCGGTGGACAGAGAAACCACAAGGCCTTTCTTGTGGAACTCCAGCAGCGGGTTCTTGGCGTATTCCAGGAACAGGCTGTTGTTGCTGAGAGGGGACATGGCGATGGGGATCTGGGTCAGGAAGTACAGGTACTGCAGCACAGGACTCTGGTGATTGAGGCCGTGAGAGATGTTGTCAGCAGTCATGAAGGCAGCCAGCAGATGGGTGATGGCACCGGCCTCACCACAGTGAGGCCTGAACGTGAATGTGTTCATCCCCCTCTGTCTGGAAACCAGAAGATAAACAAGTATTAT

Function

symbol description
ampd1 Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to act upstream of or within IMP salvage. Predicted to be active in cytosol. Is expressed in cephalic musculature; myotome; pectoral fin musculature; and trunk musculature. Orthologous to human AMPD1 (adenosine monophosphate deaminase 1).

NR:

description
PREDICTED: AMP deaminase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72631 False 875 lncRNA 0.39 2 30529321 30588095
TU72632 True 1041 lncRNA 0.44 4 30587081 30591468

Neighbor

gene id symbol gene type direction distance location
angptl7 angptl7 coding upstream 362926 30162678 ~ 30166395 (+)
nr1h5 LOC100699579,LOC102785665,LOC102209452,LOC102302160,LOC101474965 coding upstream 601343 29903859 ~ 29927978 (+)
slc66a1 pqlc2 coding upstream 626827 29894005 ~ 29902494 (+)
trim33 trim33 coding upstream 637798 29853970 ~ 29891523 (+)
otud3 otud3 coding upstream 683075 29840204 ~ 29846246 (+)
sike1 sike1 coding downstream 42333 30633801 ~ 30638995 (+)
htr6 htr6,LOC102793426 coding downstream 53276 30644744 ~ 30650059 (+)
vwa1 LOC103364336,LOC104966039,LOC104936677 coding downstream 78108 30669576 ~ 30679373 (+)
LOC120559603 ralgapb coding downstream 90321 30681789 ~ 30706780 (+)
LOC120559606 NA coding downstream 116938 30708406 ~ 30786785 (+)
G54229 NA non-coding upstream 397404 30130067 ~ 30131917 (+)
G54221 NA non-coding upstream 425338 30094052 ~ 30103983 (+)
LOC120558370 NA non-coding upstream 534912 29992127 ~ 29994409 (+)
G54108 NA non-coding upstream 763511 29761076 ~ 29765810 (+)
G54107 LOC102235830,LOC104955916,LOC108233146 non-coding upstream 768906 29759044 ~ 29760415 (+)
G54368 NA non-coding downstream 7012 30598480 ~ 30603045 (+)
G54344 NA non-coding downstream 20677 30612145 ~ 30647078 (+)
G54343 csde1,LOC102790132 non-coding downstream 22743 30614211 ~ 30618237 (+)
G54462 NA non-coding downstream 280501 30871969 ~ 30872171 (+)
G54466 NA non-coding downstream 295824 30887292 ~ 30887495 (+)
agrn agrn other upstream 42756 30214610 ~ 30486565 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other upstream 746384 29769852 ~ 29782937 (+)
G54103 LOC103366252 other upstream 771311 29752446 ~ 29758010 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other upstream 961548 29548744 ~ 29567773 (+)
plekhm2 plekhm2 other upstream 983435 29524023 ~ 29545886 (+)
micos10 minos1 other downstream 48292 30639760 ~ 30642621 (+)
G54383 NA other downstream 98184 30689652 ~ 30690404 (+)
LOC120559580 LOC101486775 other downstream 206725 30798193 ~ 30837415 (+)
znf341 NA other downstream 550802 31142270 ~ 31159511 (+)
hdac7a LOC103352821 other downstream 796339 31387807 ~ 31463330 (+)

Expression


Co-expression Network