LOC120558314 (porcn)


Basic Information

Item Value
gene id LOC120558314
gene name porcn
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12652384 ~ 12658308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799237.1
GGAAAATACTGCCCTGCCCGGGGCGTCCAGTTAGCTGTTCCTGACGTGGGGGGCTGGGGAACCGCTCTCAAGTACGTTGGTAGCATGACTGTAAATCCCGCTGGCTAGGTGAAGCAAGGTTAACGATCTTTACAAGCTAACAAGATGCTCTGCTTTCTGGCAAGTCGCCCAGCGCTGAACATACTGTGCAGTCAATGCAGCGGTTGTAGTCATGCAGCTtctagTCATGGGAGCATTCAGCCGACAGAAGTTTTTCCAAGAGCTTGCTCATGGCTGCCTGCTGCCTACAGCTCAGCAGGGCCTGGAGCAAGTATGGCAGCTGCTGGTTATCTGCCTGCTGTGTCGGCTTCTCTGGATGTTGGGCCTCCCCTCTTTTGTGAAACACCTGGGCACAGTCGCAGGAGGTTTCTACACTCTCTACCTGTTCTTTGAGCTTCATATGATCTGGGTGGTCCTCCTCAGCCTTCTCTGctacctcttcctcttcctgtgcCGCCACTCTACCATGCGAGGCACCTTCCTCTCCATCACTGTGCTCATCTACCTGCTGCTGGGCGAGCTGCACATGATGGACACCACCAACTGGCACAAGATGAGAGGTTCGCAGATGGTGGTTGCCATGAAAGCCATCTCTCTGGCCTTCGATCTGGACAGAGGTGTCGTGGCCAGTGTACCCTCACCCATTGAGTTCATGGGCTATATTTACTTTGTGGGCACAGTCATCTTTGGTCCCTGGATCAGCTTCAACAGCTACAAAGACGCTTTAGAAGGACGTAAGCTGAGCTTTTCGTGGCTTTTAAAAGTGTCTGTTAGCTGGGTGAAGAGCCAGGTCTGCCTTGTTATTTCCAACTGCGTGGCACCATACCTTTTCCCTTATTTCATACCGGTCTATGGAGACAAGTTACTACGAGGcaaaaagagaagaaagatcAGAGGTACACCGGCAAAGTGGATGCTGGCGTATGAGAACACAATGTCTTTCCACTTCAGCAACTATTTTGTTGGTTATTTGAGCGAGACTACTACTACTCTGGCTGGAGCAGGCTTTACAGAGGAGAAGGAAAACCTCAAATGGGATATGACTGTATCCAAGCCGCTGAATATAGAGTTTCCCCGGTCGATGGTGGAGGTGGTAACGTCGTGGAATCTGCCCATGTCTCGCTTTCTGCACACCTATGTTTTTAAGAGCGCGCTCAAATTTGGGACGTTCTCCGCCATCATGGTGACGTATACAGCCAGCGCCCTTCTGCATGGTTTGAGTTTTCACCTGGGTGCAGTGCTTCTGTCTCTTGGGTTCATCACGTACATTGAGCATGTGTTGCGGAAGAGGCTTGCAGCCATTTTCAATGCCTGTGTGCTGTCAAAGAAATGTCAGCCAAACTGTACTCACAGGAACAAAAAGAAGCTGTGGGTGTATTTGATTAACATAGCATTCAGCGCTCTGGCAATACTCCACCTGACGTACCTGGGCTCAGTGTTCAACTCCAGTGTCGACTACATGGAGGAGGATGAGGACGATGTAAGCCATCATACTATTCAGAAGTGGTCCGAGCTGAGCTGGACAAGCCACTGGGTCACATTTGGATGCTGGATATTGTACCGCCTCATTCTCTAATAATGAGAGACGGAGAAAGTGAAGCAATAAGGAGAGATGTATGGCTGGTTCTCCACTTCTGCACTGTGACTTTATTCCGCCTCAGACCGAAGAGAGCAGACTCAACCTGTATACAACAATAAACCAACGCCCAGTGTTCAGATTGCGCCGCATGTTGGCTGGGTAATCTATTATTCTAACCTGCCGGGGGACTAGTTTTGATATCCATGGAATGATAGCCCActcctccctccttttctcCGTATCGCATCCTTTTTTATCCGAGCCGCAGTTGTCAACCCTCATGTTGTGACAGCAGTTACCGACGTCTCACTGTGAGTCACAATCAATACCTATCAGCATGGTGGAGATTGGCTGCTCCTTTCTGTGGACACATGATAGAGCCCACTATCTAGGTGTTTTCAGGGTCGACTGCGGCAGATGTCCTCCAGACGTGGTTTCC
>XM_039799238.1
CAGCACATTGGTTGATATGATTCCGCCTGGCTGCCTAGATGACAGTCAAGTGGTGCTGATGCTGTGACAATGGGAGTCATCCAGATAAGCATCATCTGGACCGAGTGTGCTTGAAACACAGCGGTAGAACACACGCTTCACTCACAGTAAAGGGACGGGAAAGCAGCTGGGTAGAAACACGGGGAGGAACCTCCAGCTGCTGCCCAGAAAGGtctagTCATGGGAGCATTCAGCCGACAGAAGTTTTTCCAAGAGCTTGCTCATGGCTGCCTGCTGCCTACAGCTCAGCAGGGCCTGGAGCAAGTATGGCAGCTGCTGGTTATCTGCCTGCTGTGTCGGCTTCTCTGGATGTTGGGCCTCCCCTCTTTTGTGAAACACCTGGGCACAGTCGCAGGAGGTTTCTACACTCTCTACCTGTTCTTTGAGCTTCATATGATCTGGGTGGTCCTCCTCAGCCTTCTCTGctacctcttcctcttcctgtgcCGCCACTCTACCATGCGAGGCACCTTCCTCTCCATCACTGTGCTCATCTACCTGCTGCTGGGCGAGCTGCACATGATGGACACCACCAACTGGCACAAGATGAGAGGTTCGCAGATGGTGGTTGCCATGAAAGCCATCTCTCTGGCCTTCGATCTGGACAGAGGTGTCGTGGCCAGTGTACCCTCACCCATTGAGTTCATGGGCTATATTTACTTTGTGGGCACAGTCATCTTTGGTCCCTGGATCAGCTTCAACAGCTACAAAGACGCTTTAGAAGGACGTAAGCTGAGCTTTTCGTGGCTTTTAAAAGTGTCTGTTAGCTGGGTGAAGAGCCAGGTCTGCCTTGTTATTTCCAACTGCGTGGCACCATACCTTTTCCCTTATTTCATACCGGTCTATGGAGACAAGTTACTACGAGGcaaaaagagaagaaagatcAGAGGTACACCGGCAAAGTGGATGCTGGCGTATGAGAACACAATGTCTTTCCACTTCAGCAACTATTTTGTTGGTTATTTGAGCGAGACTACTACTACTCTGGCTGGAGCAGGCTTTACAGAGGAGAAGGAAAACCTCAAATGGGATATGACTGTATCCAAGCCGCTGAATATAGAGTTTCCCCGGTCGATGGTGGAGGTGGTAACGTCGTGGAATCTGCCCATGTCTCGCTTTCTGCACACCTATGTTTTTAAGAGCGCGCTCAAATTTGGGACGTTCTCCGCCATCATGGTGACGTATACAGCCAGCGCCCTTCTGCATGGTTTGAGTTTTCACCTGGGTGCAGTGCTTCTGTCTCTTGGGTTCATCACGTACATTGAGCATGTGTTGCGGAAGAGGCTTGCAGCCATTTTCAATGCCTGTGTGCTGTCAAAGAAATGTCAGCCAAACTGTACTCACAGGAACAAAAAGAAGCTGTGGGTGTATTTGATTAACATAGCATTCAGCGCTCTGGCAATACTCCACCTGACGTACCTGGGCTCAGTGTTCAACTCCAGTGTCGACTACATGGAGGAGGATGAGGACGATGTAAGCCATCATACTATTCAGAAGTGGTCCGAGCTGAGCTGGACAAGCCACTGGGTCACATTTGGATGCTGGATATTGTACCGCCTCATTCTCTAATAATGAGAGACGGAGAAAGTGAAGCAATAAGGAGAGATGTATGGCTGGTTCTCCACTTCTGCACTGTGACTTTATTCCGCCTCAGACCGAAGAGAGCAGACTCAACCTGTATACAACAATAAACCAACGCCCAGTGTTCAGATTGCGCCGCATGTTGGCTGGGTAATCTATTATTCTAACCTGCCGGGGGACTAGTTTTGATATCCATGGAATGATAGCCCActcctccctccttttctcCGTATCGCATCCTTTTTTATCCGAGCCGCAGTTGTCAACCCTCATGTTGTGACAGCAGTTACCGACGTCTCACTGTGAGTCACAATCAATACCTATCAGCATGGTGGAGATTGGCTGCTCCTTTCTGTGGACACATGATAGAGCCCACTATCTAGGTGTTTTCAGGGTCGACTGCGGCAGATGTCCTCCAGACGTGGTTTCC
>XM_039799239.1
CAGCACATTGGTTGATATGATTCCGCCTGGCTGCCTAGATGACAGTCAAGTGGTGCTGATGCTGTGACAATGGGAGTCATCCAGATAAGCATCATCTGGACCGAGTGTGCTTGAAACACAGCGGTAGAACACACGCTTCACTCACAGTAAAGGGACGGGAAAGCAGCTGGGTAGAAACACGGGGAGGAACCTCCAGCTGCTGCCCAGAAAGGTCATGGGAGCATTCAGCCGACAGAAGTTTTTCCAAGAGCTTGCTCATGGCTGCCTGCTGCCTACAGCTCAGCAGGGCCTGGAGCAAGTATGGCAGCTGCTGGTTATCTGCCTGCTGTGTCGGCTTCTCTGGATGTTGGGCCTCCCCTCTTTTGTGAAACACCTGGGCACAGTCGCAGGAGGTTTCTACACTCTCTACCTGTTCTTTGAGCTTCATATGATCTGGGTGGTCCTCCTCAGCCTTCTCTGctacctcttcctcttcctgtgcCGCCACTCTACCATGCGAGGCACCTTCCTCTCCATCACTGTGCTCATCTACCTGCTGCTGGGCGAGCTGCACATGATGGACACCACCAACTGGCACAAGATGAGAGGTTCGCAGATGGTGGTTGCCATGAAAGCCATCTCTCTGGCCTTCGATCTGGACAGAGGTGTCGTGGCCAGTGTACCCTCACCCATTGAGTTCATGGGCTATATTTACTTTGTGGGCACAGTCATCTTTGGTCCCTGGATCAGCTTCAACAGCTACAAAGACGCTTTAGAAGGACGTAAGCTGAGCTTTTCGTGGCTTTTAAAAGTGTCTGTTAGCTGGGTGAAGAGCCAGGTCTGCCTTGTTATTTCCAACTGCGTGGCACCATACCTTTTCCCTTATTTCATACCGGTCTATGGAGACAAGTTACTACGAGGcaaaaagagaagaaagatcAGAGGTACACCGGCAAAGTGGATGCTGGCGTATGAGAACACAATGTCTTTCCACTTCAGCAACTATTTTGTTGGTTATTTGAGCGAGACTACTACTACTCTGGCTGGAGCAGGCTTTACAGAGGAGAAGGAAAACCTCAAATGGGATATGACTGTATCCAAGCCGCTGAATATAGAGTTTCCCCGGTCGATGGTGGAGGTGGTAACGTCGTGGAATCTGCCCATGTCTCGCTTTCTGCACACCTATGTTTTTAAGAGCGCGCTCAAATTTGGGACGTTCTCCGCCATCATGGTGACGTATACAGCCAGCGCCCTTCTGCATGGTTTGAGTTTTCACCTGGGTGCAGTGCTTCTGTCTCTTGGGTTCATCACGTACATTGAGCATGTGTTGCGGAAGAGGCTTGCAGCCATTTTCAATGCCTGTGTGCTGTCAAAGAAATGTCAGCCAAACTGTACTCACAGGAACAAAAAGAAGCTGTGGGTGTATTTGATTAACATAGCATTCAGCGCTCTGGCAATACTCCACCTGACGTACCTGGGCTCAGTGTTCAACTCCAGTGTCGACTACATGGAGGAGGATGAGGACGATGTAAGCCATCATACTATTCAGAAGTGGTCCGAGCTGAGCTGGACAAGCCACTGGGTCACATTTGGATGCTGGATATTGTACCGCCTCATTCTCTAATAATGAGAGACGGAGAAAGTGAAGCAATAAGGAGAGATGTATGGCTGGTTCTCCACTTCTGCACTGTGACTTTATTCCGCCTCAGACCGAAGAGAGCAGACTCAACCTGTATACAACAATAAACCAACGCCCAGTGTTCAGATTGCGCCGCATGTTGGCTGGGTAATCTATTATTCTAACCTGCCGGGGGACTAGTTTTGATATCCATGGAATGATAGCCCActcctccctccttttctcCGTATCGCATCCTTTTTTATCCGAGCCGCAGTTGTCAACCCTCATGTTGTGACAGCAGTTACCGACGTCTCACTGTGAGTCACAATCAATACCTATCAGCATGGTGGAGATTGGCTGCTCCTTTCTGTGGACACATGATAGAGCCCACTATCTAGGTGTTTTCAGGGTCGACTGCGGCAGATGTCCTCCAGACGTGGTTTCC
>XR_005639089.1
TGGAAAATACTGCCCTGCCCGGGGCGTCCAGTTAGCTGTTCCTGACGTGGGGGGCTGGGGAACCGCTCTCAAGTACGTTGGTAGCATGACTGTAAATCCCGCTGGCTAGGTGAAGCAAGGTTAACGATCTTTACAAGCTAACAAGATGCTCTGCTTTCTGGCAAGTCGCCCAGCGCTGAACATACTGTGCAGTCAATGCAGCGGTTGTAGTCATGCAGCTtctagTCATGGGAGCATTCAGCCGACAGAAGTTTTTCCAAGAGCTTGCTCATGGCTGCCTGCTGCCTACAGCTCAGCAGGGCCTGGAGCAAGTATGGCAGCTGCTGGTTATCTGCCTGCTGTGTCGGCTTCTCTGGATGTTGGGCCTCCCCTCTTTTGTGAAACACCTGGGCACAGTCGCAGGAGGTTTCTACACTCTCTACCTGTTCTTTGAGCTTCATATGATCTGGGTGGTCCTCCTCAGCCTTCTCTGctacctcttcctcttcctgtgcCGCCACTCTACCATGCGAGGCACCTTCCTCTCCATCACTGTGCTCATCTACCTGCTGCTGGGCGAGCTGCACATGATGGACACCACCAACTGGCACAAGATGAGAGGTTCGCAGATGGTGGTTGCCATGAAAGCCATCTCTCTGGCCTTCGATCTGGACAGAGGTGTCGTGGCCAGTGTACCCTCACCCATTGAGTTCATGGGCTATATTTACTTTGTGGGCACAGTCATCTTTGGTCCCTGGATCAGCTTCAACAGCTACAAAGACGCTTTAGAAGGACGTAAGCTGAGCTTTTCGTGGCTTTTAAAAGTGTCTGTTAGCTGGGTGAAGAGCCAGGTCTGCCTTGTTATTTCCAACTGCGTGGCACCATACCTTTTCCCTTATTTCATACCGGTCTATGGAGACAAGTTACTACGAGGcaaaaagagaagaaagatcAGAGGTACACCGGCAAAGTGGATGCTGGCGTATGAGAACACAATGTCTTTCCACTTCAGCAACTATTTTGTTGGTTATTTGAGCGAGACTACTACTACTCTGGCTGGAGCAGGCTTTACAGAGGAGAAGGAAAACCTCAAATGGGATATGACTGTATCCAAGCCGCTGAATATAGAGTTTCCCCGGTCGATGGTGGAGGTGGTAACGTCGTGGAATCTGCCCATGTCTCGCTTTCTGCACACCTATGTTTTTAAGAGCGCGCTCAAATTTGGGACGTTCTCCGCCATCATGGTGACGTATACAGCCAGCGCCCTTCTGCATTGTTGCGGAAGAGGCTTGCAGCCATTTTCAATGCCTGTGTGCTGTCAAAGAAATGTCAGCCAAACTGTACTCACAGGAACAAAAAGAAGCTGTGGGTGTATTTGATTAACATAGCATTCAGCGCTCTGGCAATACTCCACCTGACGTACCTGGGCTCAGTGTTCAACTCCAGTGTCGACTACATGGAGGAGGATGAGGACGATGTAAGCCATCATACTATTCAGAAGTGGTCCGAGCTGAGCTGGACAAGCCACTGGGTCACATTTGGATGCTGGATATTGTACCGCCTCATTCTCTAATAATGAGAGACGGAGAAAGTGAAGCAATAAGGAGAGATGTATGGCTGGTTCTCCACTTCTGCACTGTGACTTTATTCCGCCTCAGACCGAAGAGAGCAGACTCAACCTGTATACAACAATAAACCAACGCCCAGTGTTCAGATTGCGCCGCATGTTGGCTGGGTAATCTATTATTCTAACCTGCCGGGGGACTAGTTTTGATATCCATGGAATGATAGCCCActcctccctccttttctcCGTATCGCATCCTTTTTTATCCGAGCCGCAGTTGTCAACCCTCATGTTGTGACAGCAGTTACCGACGTCTCACTGTGAGTCACAATCAATACCTATCAGCATGGTGGAGATTGGCTGCTCCTTTCTGTGGACACATGATAGAGCCCACTATCTAGGTGTTTTCAGGGTCGACTGCGGCAGATGTCCTCCAGACGTGGTTTCC

Function

symbol description
porcn Predicted to enable Wnt-protein binding activity and palmitoleoyltransferase activity. Acts upstream of or within Wnt protein secretion; convergent extension involved in gastrulation; and protein lipidation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in diencephalon; hindbrain; neural tube; spinal cord neural tube; and telencephalon. Human ortholog(s) of this gene implicated in focal dermal hypoplasia. Orthologous to human PORCN (porcupine O-acyltransferase).

NR:

description
PREDICTED: protein-cysteine N-palmitoyltransferase porcupine isoform X3

GO: NA

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799237.1 True 2057 mRNA 0.50 15 12652611 12658308
XM_039799238.1 False 2050 mRNA 0.50 15 12652384 12658308
XM_039799239.1 False 2045 mRNA 0.50 15 12652384 12658308
XR_005639089.1 False 1994 transcript 0.50 14 12652610 12658308

Neighbor

gene id symbol gene type direction distance location
LOC120559891 NA coding upstream 1609 12646536 ~ 12650775 (+)
kdm5c kdm5c coding upstream 41216 12590907 ~ 12611168 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding upstream 65016 12561811 ~ 12587368 (+)
LOC120558783 LOC103354697 coding upstream 96012 12513254 ~ 12556372 (+)
pqbp1 pqbp1 coding upstream 148042 12499369 ~ 12504342 (+)
wdr13 wdr13 coding downstream 4167 12662475 ~ 12670394 (+)
tspy LOC103354774 coding downstream 39588 12697896 ~ 12704089 (+)
LOC120559796 LOC104924663,LOC103354782 coding downstream 50335 12708643 ~ 12722596 (+)
zgc:162200 LOC103354841 coding downstream 86252 12744560 ~ 12766040 (+)
nt5dc2 nt5dc2,LOC102799881 coding downstream 110501 12768809 ~ 12779241 (+)
G49230 NA non-coding upstream 140806 12510042 ~ 12511578 (+)
G49223 NA non-coding upstream 176359 12474087 ~ 12476025 (+)
G49221 NA non-coding upstream 180112 12470450 ~ 12472272 (+)
G49157 NA non-coding upstream 287943 12364093 ~ 12364441 (+)
G49106 NA non-coding upstream 429330 12220013 ~ 12223054 (+)
G49241 LOC101072313 non-coding downstream 2119 12660427 ~ 12661371 (+)
G49301 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 non-coding downstream 16034 12674342 ~ 12677678 (+)
LOC120559802 NA non-coding downstream 68292 12726600 ~ 12732417 (+)
G49314 NA non-coding downstream 122307 12780615 ~ 12783788 (+)
G49330 NA non-coding downstream 170273 12828581 ~ 12840565 (+)
G49209 NA other upstream 193945 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 348981 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 398324 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 428746 12223567 ~ 12223638 (+)
nol4la LOC103354513,LOC100696587 other upstream 441975 12182209 ~ 12210409 (+)
LOC120559236 LOC103354867 other downstream 136635 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 202413 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 874082 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 1000424 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 1454707 14113015 ~ 14121022 (+)

Expression


Co-expression Network