LOC120558357 (LOC105928557,LOC103355067,LOC101477339)


Basic Information

Item Value
gene id LOC120558357
gene name LOC105928557,LOC103355067,LOC101477339
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13474266 ~ 13499442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799317.1
ACATTTGTTTCTTAGTGCTCGCTGAAGGGGGGACTCAGAGAGAGCCGCTGCTCACAGGCTGCCTCTCACTGGAAGGATGCAGACGCTGAAAGAAGAGCTTCTACAACAGTTAATTAAGGAGCACTCTGCACGTGCCTATAAATGCGAAGGGGCAAATGAATTCAGTGTCAGTGGGAGCAGTTCCTCAAGGGGAAGCTGTGACATTTCAAAGGTGGAATTGAAAGAGCTGTAAATCTGTTTCCTGACGCCGGCTTGACGGTCATTTCTGAATCACTGGACTGTTGCTATCAAAGTGTGGAGCAGGGAGGCAGAGTCAGTGGAGTTCTCTCCTCAAGCTAAATTCAGTTATTGGATGGTATCAATATGAGCAGCATTATGGATGGATTTATGTCATTCTGTTGAGATATTTATACACTCTTTGTTGGATTGCTCAGATGTGTCCTGTCATGTCCTGGCTGCTCTGCCTGTACCTCTGGGTCAGCGTGACTGCCATTCAGCTGTGTCAGGCCACTTTCTACGACACCATCCAACAGCATCATGGGACGAGGCCTGGACGAACCACCATCCACATGATTGaGGGGGGCACATGTGAAGTAGTTGCTGCTCACCGATGCTGTAATAAGAATCGTATTGAGGAGCGGTCACAGACGGTCAAGTGTTCTTGTCTGCCGGGGAAGGTGGCTGGAACCACCAGAAACAGACCTTCGTGTGTCGACGCATCCATAGTAATTGGGAAGTGGTGGTGTGAGATGGAGCCTTGCCTGGAGGGGGAGGAATGCAAGACGCTCCCTGACAACTCAGGCTGGATGTGTTACGCCGGCAACAAGATCAAAACCACAAGGAACACTCAGCCATACACAACATCTACATATTAACACTTTGCTGAAAGGATGCAAGGAACGCCTCTGGTGGAAAAGGTTAATCTGCAGACTGTCACAGGACCAATTATCACAAAGACAATGAACCTATTGTTGCTTTATGAAATGTGAACACTTCTCAGATTAAAGTGTAAAAACATGTAGAATACATCAACCACATCCTGCTCAAGGCTACTGAAAATACTGACACTTCAAGAAGCCCGCGGGGAACTTCATCATAACCTTGTAATGAATATATTTTCCATCTTTTCTTTCCGACTTTGAGATGGAACGTGAATGTCTGTGCATTTGGATTAATCTGGAGAGCGTCTGACGTCCTTGCTGATACATCGTGAGACAAATGTTCAATACAAAGCGCCaaaaaggagagaaatacaACAAAGGACATGGGATGAGCAAGTACAGTAGTTGACAGCcctcaggtttttattttttatttttttaatattgcaaGAGGAAAAGAAATATTGTACATACGTTGTTTGTCCTTCCTTGTGTACATGAACTTTATCTATGGTGGTGGTGAAAAATTATCATTCGAGTCCCTGAATGCGGTCTTGATCTTCCCTCTTGTTACCCTTAAAACCCAACACAGCCAAAGTTTGATGATGTAATGTAAAGATAAAACAGATGCATTGTgagggagatgtttttacaaaaTACAGCTTGTGTGTCTCAACACTGtacattttaccattttgtttgtttggtacTTGGGAGCCTATGATCACCTCTTCAATGGCTTTACCTGTCAAACTTGGTGACGTGTCAGCTACCCTGAAACCGATTGATTCACCAAAAATGTGATACCGGTAGGGTTTTCGAGACTTGAAATGCCTTATTTGTGTCAAATCATTCAAATGATGATATTGTACAGATGAAGCCATCTATTGATATGTGCTGAAATTTCATTAAAGTCATTGTTCCTGTAA
>XM_039799318.1
ACATTTGTTTCTTAGTGCTCGCTGAAGGGGGGACTCAGAGAGAGCCGCTGCTCACAGGCTGCCTCTCACTGGAAGGATGCAGACGCTGAAAGAAGAGCTTCTACAACAGTTAATTAAGGAGCACTCTGCACGTGCCTATAAATGCGAAGGGGCAAATGAATTCAGTGTCAGTGGGAGCAGTTCCTCAAGGGGAAGCTGTGACATTTCAAAGGTGGAATTGAAAGAGCTGTAAATCTGTTTCCTGACGCCGGCTTGACGGTCATTTCTGAATCACTGGACTGTTGCTATCAAAGTGTGGAGCAGGGAGGCAGAGTCAGTGGAGTTCTCTCCTCAAGCTAAATTCAGTTATTGGATGGTATCAATATGAGCAGCATTATGGATGGATTTATGTCATTCTGTTGAGATATTTATACACTCTTTGTTGGATTGCTCAGCAGATGTGTCCTGTCATGTCCTGGCTGCTCTGCCTGTACCTCTGGGTCAGCGTGACTGCCATTCAGCTGTGTCAGGCCACTTTCTACGACACCATCCAACAGCATCATGGGACGAGGCCTGGACGAACCACCATCCACATGATTGaGGGGGGCACATGTGAAGTAGTTGCTGCTCACCGATGCTGTAATAAGAATCGTATTGAGGAGCGGTCACAGACGGTCAAGTGTTCTTGTCTGCCGGGGAAGGTGGCTGGAACCACCAGAAACAGACCTTCGTGTGTCGACGCATCCATAGTAATTGGGAAGTGGTGGTGTGAGATGGAGCCTTGCCTGGAGGGGGAGGAATGCAAGACGCTCCCTGACAACTCAGGCTGGATGTGTTACGCCGGCAACAAGATCAAAACCACAAGGAACACTCAGCCATACACAACATCTACATATTAACACTTTGCTGAAAGGATGCAAGGAACGCCTCTGGTGGAAAAGGTTAATCTGCAGACTGTCACAGGACCAATTATCACAAAGACAATGAACCTATTGTTGCTTTATGAAATGTGAACACTTCTCAGATTAAAGTGTAAAAACATGTAGAATACATCAACCACATCCTGCTCAAGGCTACTGAAAATACTGACACTTCAAGAAGCCCGCGGGGAACTTCATCATAACCTTGTAATGAATATATTTTCCATCTTTTCTTTCCGACTTTGAGATGGAACGTGAATGTCTGTGCATTTGGATTAATCTGGAGAGCGTCTGACGTCCTTGCTGATACATCGTGAGACAAATGTTCAATACAAAGCGCCaaaaaggagagaaatacaACAAAGGACATGGGATGAGCAAGTACAGTAGTTGACAGCcctcaggtttttattttttatttttttaatattgcaaGAGGAAAAGAAATATTGTACATACGTTGTTTGTCCTTCCTTGTGTACATGAACTTTATCTATGGTGGTGGTGAAAAATTATCATTCGAGTCCCTGAATGCGGTCTTGATCTTCCCTCTTGTTACCCTTAAAACCCAACACAGCCAAAGTTTGATGATGTAATGTAAAGATAAAACAGATGCATTGTgagggagatgtttttacaaaaTACAGCTTGTGTGTCTCAACACTGtacattttaccattttgtttgtttggtacTTGGGAGCCTATGATCACCTCTTCAATGGCTTTACCTGTCAAACTTGGTGACGTGTCAGCTACCCTGAAACCGATTGATTCACCAAAAATGTGATACCGGTAGGGTTTTCGAGACTTGAAATGCCTTATTTGTGTCAAATCATTCAAATGATGATATTGTACAGATGAAGCCATCTATTGATATGTGCTGAAATTTCATTAAAGTCATTGTTCCTGTAA

Function

NR:

description
protein FAM19A1-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799317.1 False 1810 mRNA 0.44 6 13474266 13499442
XM_039799318.1 True 1813 mRNA 0.44 6 13474266 13499442

Neighbor

gene id symbol gene type direction distance location
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding upstream 22359 13448308 ~ 13451907 (+)
pm20d1.2 pm20d1 coding upstream 181954 13284381 ~ 13292312 (+)
lemd1 NA coding upstream 190015 13272566 ~ 13284251 (+)
LOC120558998 LOC104924681,LOC104961357 coding upstream 214945 13255847 ~ 13259321 (+)
LOC120558583 NA coding upstream 230973 13237470 ~ 13243293 (+)
LOC120559207 arl6ip5,LOC102786473,LOC101476305,LOC101073283 coding downstream 27866 13527308 ~ 13531488 (+)
LOC120559547 mitf coding downstream 65183 13564625 ~ 13605435 (+)
LOC120559296 ppp4r2 coding downstream 143187 13642629 ~ 13649896 (+)
guca1b guca1b coding downstream 152926 13652368 ~ 13654660 (+)
oard1 oard1,LOC106909399 coding downstream 156111 13655553 ~ 13657376 (+)
G49508 NA non-coding upstream 27531 13445139 ~ 13446735 (+)
G49502 NA non-coding upstream 41049 13432599 ~ 13433217 (+)
G49474 NA non-coding upstream 95857 13365731 ~ 13378409 (+)
G49461 NA non-coding upstream 166694 13306840 ~ 13307572 (+)
G49346 NA non-coding upstream 545795 12928256 ~ 12928471 (+)
G49562 NA non-coding downstream 117435 13616877 ~ 13641874 (+)
G49572 NA non-coding downstream 137424 13636866 ~ 13639093 (+)
G49585 LOC103355245,LOC104927444,LOC101062607 non-coding downstream 225646 13725088 ~ 13732249 (+)
G49591 NA non-coding downstream 250116 13749558 ~ 13750842 (+)
LOC120558703 NA non-coding downstream 259145 13758587 ~ 13992115 (+)
LOC120559134 dvl1 other upstream 588042 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 629832 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 815958 12652384 ~ 12658308 (+)
G49209 NA other upstream 1015827 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 1170863 12283427 ~ 12303403 (+)
G49538 lmod3 other downstream 32948 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 159290 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 613573 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 706155 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 1065425 14564867 ~ 14567456 (+)

Expression


Co-expression Network