LOC120558362 (LOC104955725,LOC103367226)


Basic Information

Item Value
gene id LOC120558362
gene name LOC104955725,LOC103367226
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19197807 ~ 19201491 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799332.1
TCTCTGCTTTTAATCCTCAGATATGGATATGCTCCATATGGCTTTTTTAAGAAAATAGGCATCCCTGGACCCAGACCTTTGCCCTTTATTGGGACATTTTTGGAGTACAGAAAGGGCATCCACAATTTTGACACAGAATGCTATCAGAAATATGGAAAGGTGTGGGGACTGTACGACGGAAGGCAGCCTTTACTGGCTATAATGGACACAGCAATGATCAAAACAATCTTGGTTAAGGAGTGTTATTCTGTCTTCACCAACAGACGGGATCTGGGCATAAATGGACGCTTGCGTGACGCTGTATCAATAGTAGAAGATGAGAAGTGGAAGAGGATTCGCAGTGTACTCTCTCCATCATTCACCAGCGGACGCCTGAAAGAGATGTACACAATAATGTTGCAGCACTCAAGCAATCTGATCAAGAGCCTTCACATGAAAGTAGAGGCGGATGAAGTCATAGAAGTTAAAGAAGTATTTGGACCTTACAGTATGGATGTTGTGACCAGCACTGCCTTCAGTGTGGACATTGATTCCATCAACCATCCATCTGATCCTTTTGTAGCAAACATTAAGAGAATGGTCAAGTTCAACTTATTGAATCCCTTACTTGTACTTGTGGTTCTGTTTCCATTCTTGGTGCCAATTTTTGATAGAATGGGTTTGTCATTCGTCCCTGCTGAAGTGTTGAATTTCTTCTTCAACTTTCTAAAGACGATCAAATCAGACCGGAATAAGAATGAGCACAAGAACCGAGTGGACTTCATGCAGTTGATGGTGGACTCTCAGATGTCAGAGAAGAACAAAGAGGATAAAAGCCCTAACAAAGGACTGACTGATCATGAGATCCTGTCTCAGGCCATGATATTCATCTTTGCTGGCTATGAAACCAGTAGCACCACACTGGGATTTATAGCCTACACCCTGGCAACCCACCCTCACATCCAAAAAACCCTGCAAGAGGAGATTGATGAAACCTTCCCAGAAAAGGTTCGGCCAACCTATGAAGCCTTGATGCAGATGGAATACCTGGACATGGTTATTAATGAGGCGATGAGACTGTACCCCGTTGCTAATCGATTAGAGAGGATCTCAAAGTCTTCTGTGGAAATTGACGGCGTGACCATCCCTAAAGGAACTGTCGTAACGGTACCAGTTTACACTCTCCACCGTGACCCTGCTTTGTGGTCTGAGCCTGAGGCCTTCAAGCCTGAAAGgTTCAGCAAGGAAAACAAAGACAACATTGATCCATATGCCTTCCTACCCTTTGGAACTGGGCCAAGGAACTGTATTGGCATGCAATTTGCTCTCTTGATGATGAGGTTGGCCATAGTGGAGATCCTTCAGAACTTCAGCTTTGTCACGTGCAAGGAGACAGATATTCCAATGGAGCTGGGAATAGATGCATTTACCACACCCAAGAATCCGATCAAACTGAAGCTGGAGCCCAGAGCAATCGTTGCTGATCCTCTCTCAAGCTAACTCTGATTATCTGTAGCAACTAACTTTCTTTTTCAAACCAATCTACAGCATAGCAGTTCCATTTAAAACTAATTAAAGAAAACAATTTAAGTAGACAGGACGTCTTGCAGAACTTGCATCCTTTCAATAAGTATTTCTATAACATAATTTACTTTGCATTACACAATTCCAATAAGAAGACTGTAAAGCCCAGCCAACAGCTTGGCTTGGTTCTATTAAACAAACCACTGCTGATGTTTTTGGCTTTCTCATTCACtgatagtttagtttagttctaCAATTCACTGATGGCATTACAGCCGTTCTTacaatcacatttttttcatttatataataaaaatgcTCACATTTTA

Function

NR:

description
PREDICTED: cytochrome P450 3A40-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17689 CYP3A4; cytochrome P450 family 3 subfamily A4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799332.1 True 1832 mRNA 0.42 12 19197807 19201491

Neighbor

gene id symbol gene type direction distance location
LOC120559196 LOC104963628 coding upstream 251440 18943406 ~ 18946367 (+)
ddx20 LOC107556298,LOC107556300 coding upstream 254468 18935021 ~ 18943339 (+)
LOC120558625 LOC101472665,LOC100697880,LOC103370865,LOC102215929,LOC104931656,LOC108235233,LOC103467457,LOC101161555 coding upstream 271324 18886781 ~ 18926483 (+)
LOC120558626 LOC108235173,LOC104963598,LOC102083184 coding upstream 312218 18883396 ~ 18885589 (+)
si:ch211-117c9.2 LOC103370868 coding upstream 342470 18842185 ~ 18855337 (+)
LOC120559315 LOC103367228,LOC104955723 coding downstream 3728 19205219 ~ 19220935 (+)
apeh NA coding downstream 23769 19225260 ~ 19235386 (+)
tlr9 NA coding downstream 34058 19235549 ~ 19240609 (+)
LOC120559318 NA coding downstream 40041 19241532 ~ 19327554 (+)
wnt5a wnt5a,LOC103367232,LOC102799772 coding downstream 165292 19366783 ~ 19415190 (+)
G51028 NA non-coding upstream 341281 18855367 ~ 18856526 (+)
LOC120559607 NA non-coding upstream 360376 18835280 ~ 18837431 (+)
G51017 NA non-coding upstream 439410 18758044 ~ 18758397 (+)
G50994 ncoa6,LOC105926085 non-coding upstream 509514 18686786 ~ 18688293 (+)
G50964 plcg1 non-coding upstream 557627 18636601 ~ 18640180 (+)
G51155 NA non-coding downstream 238196 19439687 ~ 19441326 (+)
G51165 LOC103362816 non-coding downstream 369702 19571193 ~ 19608956 (+)
G51167 LOC101075728,LOC104965662 non-coding downstream 386744 19588235 ~ 19590976 (+)
G51168 LOC102792445,LOC100695140,LOC103362820,LOC104933206,LOC101467308 non-coding downstream 389977 19591468 ~ 19593624 (+)
G51174 bgn non-coding downstream 415624 19617115 ~ 19618210 (+)
G50983 LOC103366028 other upstream 511505 18682143 ~ 18686302 (+)
opn7b LOC103364157,LOC103467481 other upstream 897474 18255892 ~ 18300333 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other upstream 1411409 17741371 ~ 17786398 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other upstream 2000634 17185911 ~ 17197173 (+)
eif2d eif2d other upstream 2203106 16977897 ~ 16994701 (+)
LOC120558947 lrtm1,LOC102799284 other downstream 254986 19456477 ~ 19463712 (+)
LOC120558920 LOC104941542 other downstream 566135 19767626 ~ 19768564 (+)
zgc:194242 NA other downstream 794986 19996477 ~ 20000438 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other downstream 862501 20063992 ~ 20065735 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other downstream 1244480 20445971 ~ 20532569 (+)

Expression


Co-expression Network