spo11 (spo11,LOC103368783)


Basic Information

Item Value
gene id spo11
gene name spo11,LOC103368783
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15833183 ~ 15840777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799353.1
ACATCGTGTATACATACAGTCCTGTGTAACAATAGATCATGGGATCCTGTGAAGCAGGGCTGTTTACAGAAATTGACAAGCTCCGTGCTGAACTGGTAAACAATGTCGAAGTCATGCCAGGCTGCCAGCGCGATGAAGAAGAAATTACCTAcagggAAATTTTGAGCCGCATTGAAAACGTAATCCTAGGAATAGTGACAAGTCTTTCCAAAGATGAGAACCCTGTCCTGGCACTGCCCAACAGATCCAGCTGGGCCAACGTCAGTTTTGACAGTGCCATCGGGCTTCAAATGAATTCAGGAAGTTCTGTCACCAGCATTAGGAGCGACAGTCCGTCGTCTGTTCGTAAATTTGCGCAAATTCTCAAGATCTTCTTGGTCATCTACAAACTTGTGCAGAGCAACTCCTATGCGACCAAAAGAGACATCTATTACAACAATACACAGCTGTTTGGTTCACAAAAAACGGTTGATAGTATAGTGGATGATATTTCCTGCATGCTAAAGGTTCCTCGCAGATCACTACAtgtgATGGCCACGTCCAAGGGATTAATCTCGGGTGATCTGTGTTATCTGGAGGAGGACGGCACAAGGGTTGACTGCCGCTCCGGCTCTGCTgctgtTGCAGTTTCATCGAACATTGGTGGGATTAGAAATATTGTGTCATCTGCAAAGTTTGTCATGATAGTTGAGAAGGACGCAACGTTTCAGAGACTACTGGATGACGACTTCTGTGAAAAGCTGTCTCCTTGCATCATAATTACgGGTAAAGGCGTGCCAGATGTGAACAGCAGGTTGATGGTGAGAAAGCTTTGGGACACGCTGCACATCCCCATCTTCGCACTGGTGGATGCTGACCCTCACGGAATTGAGATCATGTGTATCTACAAGTACGGATCAGTGgcCATGTCGTTTGAGGCCCACAATCTGACCGTCCCCAGCGTTATGTGGCTAGGCCTCCTCCCCTCTGACCTCCAGAGGTTGCGGGTTCCCGAGGATGCACTGATCCCCCTCACAAAGAGAGATGAAAACAAACTTAGCAGCCTCCTTAAAAGGCCATACCTAACCAGCCAACCTGACTGGCAGAAAGAGATGGAACTGATGCAGCAGACTCAGGTCAAGGCTGAAATCCAGTCCCTAGCAGCCATAGCTCCTGATTTCCTCACCAACATCTACCTGCCCAATAAGCTGCGTTACGGTGGCTGGGTCTGAGCCCAATGCTGCCtctcaatggaaaaacaagtgAACTGCTAAAACAGGTTGCAAAACTAAAGAAAGATCGTCCATGTAACTTTCCTGCCTAACCTTGTCAGACAGATTCAAATCTTAAGTTGGTCTGTAATGTTTGCATATTTATTAGAGACTATGTCTGTTTATCTTTAATACTAAACACTAACTATCTCCTATCATTAAAGCCCTGTAATCCCATTGACAAGTCAGAGCATGTTGTTGATCTTTATATTCTTGTTGGCCTTGTTTGTATTCCCTAAATGTTTGGACCTTGCAAAGTCACTAAAGTTTGTTTCATTCATGGAGTTAATTATTCTACCTTGCATGCTTTACAGCCACTGAGCACCACTGTGCTGGTGCAAAGACTGCAAGTGAGCAGATGATGATGATTCAGTGGTTTGGAACTGGAGTATCTGTGAGGCTGTTCATTCATTAATGCGCAACATATAAAGGCTCACGTTGCTGTTCTTTGTGTAATCAGTTCTCCAGCAGGTGCAGACAGTGTTCATTAAATGGAAGAATTGGGCACTATTTTAAGCTTTATCAGGGAAGAACGAGGTAAAGACGAGTAGAGCCATTCAGGAGGCATATGCATCACTGTTAGGCTAGACAGCCGGTTTCAAGGCTTATCTTTAGAGAAGAGGGCCATTTTATGTGTGCTTCctctttatgtatttatttacttcaTTTAACCTATGTATATAAAAACTAGGGATAGGCTGATTAtcgggctgttttttttttggcagtttgcagatcatctgtatcagcgttttatttgcctgataaccgataaagttataTAATTAAAATATGCGCTACTTTGGCGCCGCTacagctctgtctgtccctctgtttcGCTTTCACTCCCCACTGAGTCAGACTTAATGttccgcccacaacactatctgactatcttttactgtatattatg
>XM_039799354.1
ACATCGTGTATACATACAGTCCTGTGTAACAATAGATCATGGGATCCTGTGAAGCAGGGCTGTTTACAGAAATTGACAAGCTCCGTGCTGAACTGGTAAACAATGTCGAAGTCATGCCAGGCTGCCAGCGCGATGAAGAAGAAATTACCTAcagggAAATTTTGAGCCGCATTGAAAACGTAATCCTAGGAATAGTGACAAGTCTTTCCAAAGATGAGAACCCTGTCCTGGCACTGCCCAACAGATCCAGCTGGGCCAACGTCAGTTTTGACAGTGCCATCGGGCTTCAAATGAATTCAGGAAGTTCTGTCACCAGCATTAGGAGCGACAGTCCGTCGTCTGTTCGTAAATTTGCGCAAATTCTCAAGATCTTCTTGGTCATCTACAAACTTGTGCAGAGCAACTCCTATGCGACCAAAAGAGACATCTATTACAACAATACACAGCTGTTTGGTTCACAAAAAACGGTTGATAGTATAGTGGATGATATTTCCTGCATGCTAAAGGTTCCTCGCAGATCACTACAtgtgATGGCCACGTCCAAGGGATTAATCTCGGGTGATCTGTGTTATCTGGAGGAGGACGGCACAAGGGTTGACTGCCGCTCCGGCTCTGCTgctgtTGCAGTTTCATCGAACATTGATATTGTGTCATCTGCAAAGTTTGTCATGATAGTTGAGAAGGACGCAACGTTTCAGAGACTACTGGATGACGACTTCTGTGAAAAGCTGTCTCCTTGCATCATAATTACgGGTAAAGGCGTGCCAGATGTGAACAGCAGGTTGATGGTGAGAAAGCTTTGGGACACGCTGCACATCCCCATCTTCGCACTGGTGGATGCTGACCCTCACGGAATTGAGATCATGTGTATCTACAAGTACGGATCAGTGgcCATGTCGTTTGAGGCCCACAATCTGACCGTCCCCAGCGTTATGTGGCTAGGCCTCCTCCCCTCTGACCTCCAGAGGTTGCGGGTTCCCGAGGATGCACTGATCCCCCTCACAAAGAGAGATGAAAACAAACTTAGCAGCCTCCTTAAAAGGCCATACCTAACCAGCCAACCTGACTGGCAGAAAGAGATGGAACTGATGCAGCAGACTCAGGTCAAGGCTGAAATCCAGTCCCTAGCAGCCATAGCTCCTGATTTCCTCACCAACATCTACCTGCCCAATAAGCTGCGTTACGGTGGCTGGGTCTGAGCCCAATGCTGCCtctcaatggaaaaacaagtgAACTGCTAAAACAGGTTGCAAAACTAAAGAAAGATCGTCCATGTAACTTTCCTGCCTAACCTTGTCAGACAGATTCAAATCTTAAGTTGGTCTGTAATGTTTGCATATTTATTAGAGACTATGTCTGTTTATCTTTAATACTAAACACTAACTATCTCCTATCATTAAAGCCCTGTAATCCCATTGACAAGTCAGAGCATGTTGTTGATCTTTATATTCTTGTTGGCCTTGTTTGTATTCCCTAAATGTTTGGACCTTGCAAAGTCACTAAAGTTTGTTTCATTCATGGAGTTAATTATTCTACCTTGCATGCTTTACAGCCACTGAGCACCACTGTGCTGGTGCAAAGACTGCAAGTGAGCAGATGATGATGATTCAGTGGTTTGGAACTGGAGTATCTGTGAGGCTGTTCATTCATTAATGCGCAACATATAAAGGCTCACGTTGCTGTTCTTTGTGTAATCAGTTCTCCAGCAGGTGCAGACAGTGTTCATTAAATGGAAGAATTGGGCACTATTTTAAGCTTTATCAGGGAAGAACGAGGTAAAGACGAGTAGAGCCATTCAGGAGGCATATGCATCACTGTTAGGCTAGACAGCCGGTTTCAAGGCTTATCTTTAGAGAAGAGGGCCATTTTATGTGTGCTTCctctttatgtatttatttacttcaTTTAACCTATGTATATAAAAACTAGGGATAGGCTGATTAtcgggctgttttttttttggcagtttgcagatcatctgtatcagcgttttatttgcctgataaccgataaagttataTAATTAAAATATGCGCTACTTTGGCGCCGCTacagctctgtctgtccctctgtttcGCTTTCACTCCCCACTGAGTCAGACTTAATGttccgcccacaacactatctgactatcttttactgtatattatg
>XM_039799355.1
ATCGTGTATACATACAGTCCTGTGTAACAATAGATCATGGGATCCTGTGAAGCAGGGCTGTTTACAGAAATTGACAAGCTCCGTGCTGAACTGGTAAACAATGTCGAAGTCATGCCAGGCTGCCAGCGCGATGAAGAAGAAATTACCTAGTAAGTTCCGcagggAAATTTTGAGCCGCATTGAAAACGTAATCCTAGGAATAGTGACAAGTCTTTCCAAAGATGAGAACCCTGTCCTGGCACTGCCCAACAGATCCAGCTGGGCCAACGTCAGTTTTGACAGTGCCATCGGGCTTCAAATGAATTCAGGAAGTTCTGTCACCAGCATTAGGAGCGACAGTCCGTCGTCTGTTCGTAAATTTGCGCAAATTCTCAAGATCTTCTTGGTCATCTACAAACTTGTGCAGAGCAACTCCTATGCGACCAAAAGAGACATCTATTACAACAATACACAGCTGTTTGGTTCACAAAAAACGGTTGATAGTATAGTGGATGATATTTCCTGCATGCTAAAGGTTCCTCGCAGATCACTACAtgtgATGGCCACGTCCAAGGGATTAATCTCGGGTGATCTGTGTTATCTGGAGGAGGACGGCACAAGGGTTGACTGCCGCTCCGGCTCTGCTgctgtTGCAGTTTCATCGAACATTGGTGGGATTAGAAATATTGTGTCATCTGCAAAGTTTGTCATGATAGTTGAGAAGGACGCAACGTTTCAGAGACTACTGGATGACGACTTCTGTGAAAAGCTGTCTCCTTGCATCATAATTACgGGTAAAGGCGTGCCAGATGTGAACAGCAGGTTGATGGTGAGAAAGCTTTGGGACACGCTGCACATCCCCATCTTCGCACTGGTGGATGCTGACCCTCACGGAATTGAGATCATGTGTATCTACAAGTACGGATCAGTGgcCATGTCGTTTGAGGCCCACAATCTGACCGTCCCCAGCGTTATGTGGCTAGGCCTCCTCCCCTCTGACCTCCAGAGGTTGCGGGTTCCCGAGGATGCACTGATCCCCCTCACAAAGAGAGATGAAAACAAACTTAGCAGCCTCCTTAAAAGGCCATACCTAACCAGCCAACCTGACTGGCAGAAAGAGATGGAACTGATGCAGCAGACTCAGGTCAAGGCTGAAATCCAGTCCCTAGCAGCCATAGCTCCTGATTTCCTCACCAACATCTACCTGCCCAATAAGCTGCGTTACGGTGGCTGGGTCTGAGCCCAATGCTGCCtctcaatggaaaaacaagtgAACTGCTAAAACAGGTTGCAAAACTAAAGAAAGATCGTCCATGTAACTTTCCTGCCTAACCTTGTCAGACAGATTCAAATCTTAAGTTGGTCTGTAATGTTTGCATATTTATTAGAGACTATGTCTGTTTATCTTTAATACTAAACACTAACTATCTCCTATCATTAAAGCCCTGTAATCCCATTGACAAGTCAGAGCATGTTGTTGATCTTTATATTCTTGTTGGCCTTGTTTGTATTCCCTAAATGTTTGGACCTTGCAAAGTCACTAAAGTTTGTTTCATTCATGGAGTTAATTATTCTACCTTGCATGCTTTACAGCCACTGAGCACCACTGTGCTGGTGCAAAGACTGCAAGTGAGCAGATGATGATGATTCAGTGGTTTGGAACTGGAGTATCTGTGAGGCTGTTCATTCATTAATGCGCAACATATAAAGGCTCACGTTGCTGTTCTTTGTGTAATCAGTTCTCCAGCAGGTGCAGACAGTGTTCATTAAATGGAAGAATTGGGCACTATTTTAAGCTTTATCAGGGAAGAACGAGGTAAAGACGAGTAGAGCCATTCAGGAGGCATATGCATCACTGTTAGGCTAGACAGCCGGTTTCAAGGCTTATCTTTAGAGAAGAGGGCCATTTTATGTGTGCTTCctctttatgtatttatttacttcaTTTAACCTATGTATATAAAAACTAGGGATAGGCTGATTAtcgggctgttttttttttggcagtttgcagatcatctgtatcagcgttttatttgcctgataaccgataaagttataTAATTAAAATATGCGCTACTTTGGCGCCGCTacagctctgtctgtccctctgtttcGCTTTCACTCCCCACTGAGTCAGACTTAATGttccgcccacaacactatctgactatcttttactgtatattatg

Function

symbol description
spo11 Predicted to enable DNA binding activity. Acts upstream of or within chromosome organization involved in meiotic cell cycle. Predicted to be located in chromosome. Predicted to be active in nuclear chromosome. Orthologous to human SPO11 (SPO11 initiator of meiotic double stranded breaks).

NR:

description
meiotic recombination protein SPO11 isoform X3

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10878 SPO11; meiotic recombination protein SPO11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799353.1 False 2163 mRNA 0.44 13 15833183 15840777
XM_039799354.1 False 2151 mRNA 0.44 13 15833183 15840777
XM_039799355.1 True 2171 mRNA 0.44 13 15833185 15840777

Neighbor

gene id symbol gene type direction distance location
mtg2 mtg2 coding upstream 132807 15697279 ~ 15700376 (+)
LOC120559909 ss18l1,LOC102784650 coding upstream 136305 15687325 ~ 15696878 (+)
lsm14b NA coding upstream 146992 15682257 ~ 15686191 (+)
LOC120558693 cdh4,LOC100707506,LOC101477622 coding upstream 195760 15375411 ~ 15637423 (+)
kcnk15 LOC104919657,LOC103357353,LOC104951678,LOC100707244 coding upstream 717999 15088421 ~ 15115184 (+)
LOC120558427 LOC104958737 coding downstream 1166 15841943 ~ 15847795 (+)
LOC120559823 LOC103368780,LOC104958736,LOC100707957 coding downstream 9875 15850652 ~ 15855043 (+)
syn2a LOC103368776,LOC108232134,LOC102310081,LOC100708766,LOC102780991,LOC102197631,LOC101471639 coding downstream 81597 15922374 ~ 15934225 (+)
cnbpa cnbp,LOC100709667,LOC101470196 coding downstream 111725 15952502 ~ 15956674 (+)
LOC120559633 LOC102199705,LOC100709941 coding downstream 116806 15957583 ~ 15961003 (+)
G50029 NA non-coding upstream 127715 15705096 ~ 15705468 (+)
G50017 NA non-coding upstream 163639 15667249 ~ 15669544 (+)
G50011 NA non-coding upstream 193882 15637483 ~ 15639301 (+)
G50014 NA non-coding upstream 410575 15422319 ~ 15422608 (+)
G50003 NA non-coding upstream 555537 15277446 ~ 15277646 (+)
G50077 NA non-coding downstream 108472 15949249 ~ 15951172 (+)
G50218 NA non-coding downstream 444780 16285557 ~ 16285759 (+)
G50280 NA non-coding downstream 584841 16425618 ~ 16425820 (+)
LOC120558722 NA non-coding downstream 703492 16544269 ~ 16545835 (+)
G50318 NA non-coding downstream 726224 16567001 ~ 16569382 (+)
zmp:0000000926 LOC104958731,LOC103370836,LOC104919619 other upstream 34226 15772217 ~ 15798957 (+)
G49776 NA other upstream 1255611 14574542 ~ 14577572 (+)
G49773 LOC103358639 other upstream 1265727 14564867 ~ 14567456 (+)
uhrf1bp1 uhrf1bp1 other upstream 1605295 14205597 ~ 14227888 (+)
hmga1a hmga1,LOC103355299 other upstream 1712161 14113015 ~ 14121022 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other downstream 45213 15885990 ~ 15969331 (+)
LOC120559121 NA other downstream 463535 16304312 ~ 16311017 (+)
LOC120559119 LOC104967193 other downstream 482044 16322821 ~ 16379645 (+)
brpf1 brpf1 other downstream 539267 16380044 ~ 16396208 (+)
LOC120559923 NA other downstream 556892 16397669 ~ 16408461 (+)

Expression


Co-expression Network