LOC120558381 (LOC100699862,LOC103374679,LOC104941073)


Basic Information

Item Value
gene id LOC120558381
gene name LOC100699862,LOC103374679,LOC104941073
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4254640 ~ 4258571 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799356.1
AAGGTTTTTTAGTGCCACACTCCAACAATAAAGACTGGGGCAGTTCTTGTGCTGTGTCTGAGTGCAGCGGTGTGTCAGAGGCAGGGAAGGACCAGCAGCCATGGATGACGTATATAAAGCAGCGGTTGAGAACTTGACAGAGGAACAAAAAAATGAGTTCAAGGCTGCGTTTGACATCTTCATCCAGGATGCAGAGGACGGCTGCATCAGCACCAAAGAGTTGGGAAAGGTGATGAGGATGCTGGGACAGAATCCCACCCCTGAAGAGTTACAGGAGATGATTGATGAGGTGGATGAGGATGGGAGTGGCACAGTTGATTTTGATGAGTTCTTGGTTATGATGGTCCGCTGCATGAAGGAGGAGAGCAAAGGAAAATCAGAGGAGGAGTTGGCTGAACTGTTCCGCATGTTTGACAAGTAGGTTCCTCTTTGTATTTTCGC

Function

NR:

description
PREDICTED: troponin C, slow skeletal and cardiac muscles

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799356.1 True 441 mRNA 0.48 4 4254640 4258571

Neighbor

gene id symbol gene type direction distance location
LOC120559787 LOC103357833 coding upstream 74304 4084694 ~ 4180336 (+)
mfn2 mfn2 coding upstream 194927 4030523 ~ 4059713 (+)
LOC120558402 LOC103357835,LOC104954328 coding upstream 240039 4005265 ~ 4014601 (+)
LOC120558400 NA coding upstream 272359 3958556 ~ 3982281 (+)
LOC120559447 lactbl1,LOC103362248,LOC100707689,LOC101473793,LOC102312186 coding upstream 520249 3725961 ~ 3734391 (+)
LOC120559099 NA coding downstream 8304 4266875 ~ 4281526 (+)
LOC120558632 LOC101473708,LOC108431628,LOC107592856 coding downstream 172817 4431388 ~ 4587064 (+)
LOC120558307 NA coding downstream 1117732 5376303 ~ 5387260 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 1488638 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 1805279 6063850 ~ 6234843 (+)
G47113 NA non-coding upstream 179740 4074028 ~ 4074900 (+)
G47076 NA non-coding upstream 198677 4055674 ~ 4055963 (+)
G47062 NA non-coding upstream 235561 4015192 ~ 4019079 (+)
G47045 NA non-coding upstream 319050 3934329 ~ 3935590 (+)
LOC120559454 NA non-coding upstream 328775 3920578 ~ 3925865 (+)
LOC120558383 NA non-coding downstream 248 4258819 ~ 4264632 (+)
LOC120558318 NA non-coding downstream 400895 4659466 ~ 4666871 (+)
LOC120559518 NA non-coding downstream 503818 4762389 ~ 4766774 (+)
LOC120559496 NA non-coding downstream 510709 4769280 ~ 4772306 (+)
G47276 NA non-coding downstream 519546 4778117 ~ 4778555 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 388842 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 739882 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 950003 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 966551 3146481 ~ 3288089 (+)
G46574 NA other upstream 1484187 2745898 ~ 2770453 (+)
LOC120559501 NA other downstream 514361 4772932 ~ 4775358 (+)
G47444 NA other downstream 1940475 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 2439422 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 3853870 8112441 ~ 8116228 (+)
pkig pkig other downstream 4084179 8342750 ~ 8380578 (+)

Expression


Co-expression Network