LOC120558407


Basic Information

Item Value
gene id LOC120558407
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10758397 ~ 10811552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799395.1
aatgtgcggcggccGGTGTGGATAGTGAGGCGCACCGCCACAcaatagtctatgtgtgggaaacactggagtTCACCTTCGTTTTTTACTCTAAAGCTCCCAGACTTCAGTCAGACTTGGCAGACTCCGTCATGTTTGTCACTTACTTCCTACTGCTGAGCAGTCTTGGTCTTGTCATTACAACTCAAGCTCAAGACTGCTCCAAACCTGCAGGAGGAGACAACATGGGTTTGAAGGGCGATGACATTCTTTTACAAACATTCCCAGAGGGGAAGCAAGTGACTTTTGCCTGCAATGTTGGCTATGTGACTGCAGGAGGGTCTCCATCCAGTACTTGTACTGCTGGCACCTGGACTCCTCTGACGCTGAAATGCGAGAGGAGGGACTGTGGCTTTGCTGGAGAAGTGGACAACGGAAATGTCGATTACCCTGAAGGGACACACTTTGGTGATAGACTAGTGGTCACTTGCAACACCGGCTTCTATATGGTCCCCAACAAAGGTCAAATCCTTTGTGGAGCCCAAGGGTGGATGGACAGCTTGCCTGTATGTGAAGTGGTGACTTGTGGTCCGCCACCTGTGGTAGTGAATGGTGTTTTCAGTCCAGTCAAAGAATCCTATGACTATAGAGAAGTTGTACAGtacaaatgtcaaaatgattATACACTTAATGGATCAATTTCAATATCATGTTCAGAACATGGAACATTTGGTCCTGCTCCAACATGTGTCCTGGTTCGATGTGAGGATCCTAATATAGCCAATGGTGAACAGGTTGATGGTTCTCGACCCCCTCATGGATACAATTCTACGGTGACATACGAGTGCAAATCTGGGTATGTTATGGAAGGAGGATGCAGCCTGACATGTGGAATAGATAGTCAGTGGTCACCTGGACTTCCAACATGTCAAAGGAGGGACTGTGGCTCTGCTGGAGAAGTGGAAAACGGAAATGTCGATTACCCTGAAGAGACACGGTTTGGTGATAAACTAGTGGTCACTTGCAACACCGGCTTCCATATGGTCCCCAACAAAGGTCAAATCTTTTGTGGAGCCCAAGGGTGGATGGACAGGTTGCCTGTATGTGAAGTGGTTCGATGTGAGGATCCTAATATAGCCAATGGTCACCAGGTTGATGGTTCTCGACTCCCTCATGGATACATGTCTATGGTGACATATGAGTGCATATCTGGGTATGTTATGGAAGGAGGACGCACCCTGACATGTGGAATAGATAGTCAGTGGTTACCTGGACTTCCAACATGTCAAAGTAAGTCATTAATTGAAATTACTACTTGGTGTAAGTCTGTAAAGAAAGGTCAACCTGTTACGTTTGCCCATGATGAAAACATGATTAGTATACTAATCCAGATGCCATCACATTTTTACATGTGATTAATCTCATAACATTGCATATACTTCCGTCAGTAGTTTCCCTTTTAG

Function

GO: NA

KEGG:

id description
ko01040 Biosynthesis of unsaturated fatty acids
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799395.1 True 1442 mRNA 0.46 10 10758397 10811552

Neighbor

gene id symbol gene type direction distance location
LOC120558406 NA coding upstream 10844 10593784 ~ 10747553 (+)
LOC120559192 NA coding upstream 174868 10574601 ~ 10583529 (+)
LOC120559190 LOC103365742 coding upstream 218045 10530663 ~ 10540352 (+)
magi3a magi3 coding upstream 232063 10326748 ~ 10526334 (+)
tmem269 LOC103365731,LOC102791044,LOC104928629,LOC100689985,LOC100710458,LOC108237576,LOC101473555 coding upstream 441761 10303395 ~ 10316636 (+)
LOC120558497 NA coding downstream 505878 11317430 ~ 11328619 (+)
rapgef3 LOC103365870 coding downstream 541062 11352614 ~ 11382149 (+)
dazap2 dazap2 coding downstream 687320 11498872 ~ 11503554 (+)
si:ch211-210c8.6 LOC103365959,LOC103139179,LOC106936181,LOC105935261,LOC100690432,LOC102797068,LOC102213155 coding downstream 705092 11516644 ~ 11520131 (+)
LOC120558490 LOC102302598,LOC100690975 coding downstream 720647 11532199 ~ 11563315 (+)
LOC120558408 NA non-coding upstream 120752 10636476 ~ 10637645 (+)
G48639 NA non-coding upstream 171854 10586159 ~ 10586543 (+)
LOC120559193 NA non-coding upstream 198157 10544009 ~ 10560240 (+)
G48602 NA non-coding upstream 215471 10511822 ~ 10542926 (+)
G48594 NA non-coding upstream 353638 10404052 ~ 10404759 (+)
G48670 NA non-coding downstream 43950 10855502 ~ 10899132 (+)
G48671 LOC103365835,LOC104948831,LOC100710642 non-coding downstream 56306 10867858 ~ 10871077 (+)
G48680 NA non-coding downstream 95808 10907360 ~ 10960482 (+)
G48679 NA non-coding downstream 98591 10910143 ~ 10912072 (+)
G48755 NA non-coding downstream 396735 11208287 ~ 11208634 (+)
G48640 NA other upstream 7969 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 607146 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 833316 9922600 ~ 9925081 (+)
G48347 NA other upstream 1328450 9404224 ~ 9429947 (+)
LOC120559255 tshz2 other upstream 1636485 8990487 ~ 9121912 (+)
G48752 NA other downstream 361043 11172595 ~ 11173654 (+)
G48765 NA other downstream 503110 11314662 ~ 11315992 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 1272900 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 1281227 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 1370657 12182209 ~ 12210409 (+)

Expression


Co-expression Network