LOC120558417


Basic Information

Item Value
gene id LOC120558417
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12381032 ~ 12386273 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799408.1
CCGTCAGTGGTTCAAATGAATGGGCTTCCTAAACTACGCCTCCTCTGTCAGGCAATATTATCCCAGCGGTCAGCAGTCACTAATGTGCAGCGGAGTCCTGCCAAATCAAGCATTATTATCGCCGACCCCTACTGTCACTTTAAGAAGCACCGATGCAGCAGACGCAGTTGCCTCATTTCATCTCCGGGCTCCATGGCTGCAGGATGGACTCTCATCAGCAGCATCTTTTCTTCCTGTTGCCACCAGGGACTGTTCATCGACCATCAAGTCTGGCGAGAACCGAGGGTTTTCTACGATGCGCAACTTCCACCTGCCGAAATGGCGCTCAGTGGGCACTGGTGGCGGCGGCAGCGTGCGATGTTCCCACAGTGATGCATCCAGTATCCACACCTATCCCGGTCGGGTTAGGGCAGCGGAGGGCAGCCCCACAGCCCGGACGCATCCTAGTACACCCAGGCGTCAGGCAAAGCACACAGCATGCAGTGACAACCATGGGATCAGGCCCCCGACCCCGGAGCAGTACCTTACCCCTCTGCAACAGAAGGAGGTGTGTATACGACATCTGCGAGCCAGACTGAGGGACAATGTGGAAAGACTACAACACAGAGACTGTGAAATAGATGAGTTGAGGAGCCAACTGTACAGGATGCAGGAAGACTGGATAGAGGAGGAATGTCACCGTGTGGAGGCCCAGTTAGCCCTGAAAGAGGCTCGCAAGGAGATCCAGCACCTTCAGGAGGTGGTTGAGACAGTGAGGTCCAACCTGAGTGTCCGCGAACAAGACCCCCATGACACGCACAAGCCATACTCAGGGTTGCAGGGAGCTCGGCCAGGGGGGAGGTCTCGCTCCTGTGGTTGTTCCCCAGCCAGCACTTTGAGTCGCAGCAGCACCACCCACACCCGACTGAGCAGCGAGGCTCTGCATTTGGAGCGCAGCTCGAACGCTCCCGAGTCAAGCAGAGAGTCTCGCCCGGCGGGACAAACCCACCTGCTCCTGGAGGCGGCCCTCCTATCAGAGCAGCTGCCCCCACAAACCCGCATCCGAGGCCCCCCAGCTGTGCCACGCTCTTCCACCTACGAAAGGCTGTGCAGTGGGGGAGCGGTGTTGCCGATCTCACACTCCTGCCACAGTCTCAGTAGCAGCTGCAAGTGCAGTGGCCACACCTACCCCCCCCACCATCACTTGTTCCTGCATTTACCTCAGGAGGAGGCCCCAGTAACAACTGCAACTGCAGCTGTCCCTGCTACCAAGCCCATCCCTACTCCTTCTCCTGCAGCGGAGAAGAAGCCAGAGGTGCGCTCCCAGGCCTGCAGCCCGACCATGACCTGGCTGTGTGAGGAAAGCGGTGTCCAAGAGCTGAGTATCATTTCTTTAGCCACAGCAGACATCACCCCTTCAGAACCCCATCGCTTTCCATCGTCTTTACCTGCTGCGTTCCCTCCTGAGCATTCCTACGGCGTAGAGCCACTACCACCCGACAGACCAGAGGAGGTAACAAAGATGCCAGGAGAGCCCCACAGCTGCCAACCCCACCCTATAGCTCCACTCCCAGAGAGGCAGGACGCTGTAGTAGTGGAGATAGAAGAGGACCATGAGGATGAAGCCGAAGGTACAAATGAAGATGGGTATTCCCCTCAGCTCTGCCACTGGAGCCGGTACTTCCTCGTAGATCTGTTGGCGTTGGCGATGCCAGTGGTGCCAACCATGGCGTGGCTGTGTCGAGGGGGGCCACGGGAAGTCATGCCGGTGTATCATATTGGCTCCCTGCTGAGAGGTTGCTGTGCTGTGGCTCTTCACTCGCTGCGCCGCCGGGGTGCAGGCAGAGGACGCAGGCCTATCAGCATGAATGGAACAACGCCGATCTAAGACTTTCTTGCTCTCTCTGACATAAAGATTACAACTCCCAACCTCTGCAGGCACAGCCACAGCAATGCTGACTTTATTACAGTTTGGCTATGCCGTGTGTTGGATATCTCTTATAAGATTTCTAGGTTTTACATAATGCCCTTGTGATTTTGTGGTCATGCCTTGCCTTAGAAAACAAAGGATTAGTTGTCCATTATTTCATTACTCAAATACACTTACTGCTACTGCCTGCAGATTAAGTGGTTGTCTCTTTATTGGAATTTGCATGTAACCCACAGTTTGGTTGGGTTCTCTTGCTTGAATTAAAATCCCCTACCAGGATTTAGATGATATCCTCTGGGCAAAGATATTCACTAAATGTTATGAAAAGAAGCAAAAGAGAATTGTCTCAAGTTAAATGTTCCTCTATTTTTATcatcacatttttaaaagaaattggTTAAAAGGGAAAGGGAGAGTCACATTaatgaaatatgaaatgaaaatgttccgcaaaaatcagaaaaataaattacagtCAGTACGTCTGACTTGTTCTGAAGTAGTTCATAGATTTAAAGAGCACAGTGAGTGTAGGCAGCAAAGTTTTTTACACACATGAAAATATCGACTGTGGTTGAAAGCTGTTGGGACTTTTACCTTTTGAAAAGCATGTGCATTAAATCTAGTTCTCAGGTGCAGAACAGACAGGTTATTGATATTTTTGCCAATAAACAAAACGTGGGAGTTTAAAA
>XM_039799409.1
TCAGTGGTTCAAATGAATGGGCTTCCTAAACTACGCCTCCTCTGTCAGGCAATATTATCCCAGCGGTCAGCAGTCACTAATGTGCAGCGGAGTCCTGCCAAATCAAGCATTATTATCGCCGACCCCTACTGTCACTTTAAGAAGCACCGATGCAGCAGACGCAGTTGCCTCATTTCATCTCCGGGCTCCATGGCTGCAGGATGGACTCTCATCAGCAGCATCTTTTCTTCCTGTTGCCACCAGGGACTGTTCATCGACCATCAAGTCTGGCGAGAACCGAGGGTTTTCTACGATGCGCAACTTCCACCTGCCGAAATGCTGTGAGGGCTCCTAGCGTCCCTATCTAGAGACAGCTGTGGAAAGATCGGAGGTCCCTTGCACATCAATGTCTCTCACTCCGAGTCGAAAGCCCTCCTCAGGTCAGCGCAGGCGCTCAGTGGGCACTGGTGGCGGCGGCAGCGTGCGATGTTCCCACAGTGATGCATCCAGTATCCACACCTATCCCGGTCGGGTTAGGGCAGCGGAGGGCAGCCCCACAGCCCGGACGCATCCTAGTACACCCAGGCGTCAGGCAAAGCACACAGCATGCAGTGACAACCATGGGATCAGGCCCCCGACCCCGGAGCAGTACCTTACCCCTCTGCAACAGAAGGAGGTGTGTATACGACATCTGCGAGCCAGACTGAGGGACAATGTGGAAAGACTACAACACAGAGACTGTGAAATAGATGAGTTGAGGAGCCAACTGTACAGGATGCAGGAAGACTGGATAGAGGAGGAATGTCACCGTGTGGAGGCCCAGTTAGCCCTGAAAGAGGCTCGCAAGGAGATCCAGCACCTTCAGGAGGTGGTTGAGACAGTGAGGTCCAACCTGAGTGTCCGCGAACAAGACCCCCATGACACGCACAAGCCATACTCAGGGTTGCAGGGAGCTCGGCCAGGGGGGAGGTCTCGCTCCTGTGGTTGTTCCCCAGCCAGCACTTTGAGTCGCAGCAGCACCACCCACACCCGACTGAGCAGCGAGGCTCTGCATTTGGAGCGCAGCTCGAACGCTCCCGAGTCAAGCAGAGAGTCTCGCCCGGCGGGACAAACCCACCTGCTCCTGGAGGCGGCCCTCCTATCAGAGCAGCTGCCCCCACAAACCCGCATCCGAGGCCCCCCAGCTGTGCCACGCTCTTCCACCTACGAAAGGCTGTGCAGTGGGGGAGCGGTGTTGCCGATCTCACACTCCTGCCACAGTCTCAGTAGCAGCTGCAAGTGCAGTGGCCACACCTACCCCCCCCACCATCACTTGTTCCTGCATTTACCTCAGGAGGAGGCCCCAGTAACAACTGCAACTGCAGCTGTCCCTGCTACCAAGCCCATCCCTACTCCTTCTCCTGCAGCGGAGAAGAAGCCAGAGGTGCGCTCCCAGGCCTGCAGCCCGACCATGACCTGGCTGTGTGAGGAAAGCGGTGTCCAAGAGCTGAGTATCATTTCTTTAGCCACAGCAGACATCACCCCTTCAGAACCCCATCGCTTTCCATCGTCTTTACCTGCTGCGTTCCCTCCTGAGCATTCCTACGGCGTAGAGCCACTACCACCCGACAGACCAGAGGAGGTAACAAAGATGCCAGGAGAGCCCCACAGCTGCCAACCCCACCCTATAGCTCCACTCCCAGAGAGGCAGGACGCTGTAGTAGTGGAGATAGAAGAGGACCATGAGGATGAAGCCGAAGGTACAAATGAAGATGGGTATTCCCCTCAGCTCTGCCACTGGAGCCGGTACTTCCTCGTAGATCTGTTGGCGTTGGCGATGCCAGTGGTGCCAACCATGGCGTGGCTGTGTCGAGGGGGGCCACGGGAAGTCATGCCGGTGTATCATATTGGCTCCCTGCTGAGAGGTTGCTGTGCTGTGGCTCTTCACTCGCTGCGCCGCCGGGGTGCAGGCAGAGGACGCAGGCCTATCAGCATGAATGGAACAACGCCGATCTAAGACTTTCTTGCTCTCTCTGACATAAAGATTACAACTCCCAACCTCTGCAGGCACAGCCACAGCAATGCTGACTTTATTACAGTTTGGCTATGCCGTGTGTTGGATATCTCTTATAAGATTTCTAGGTTTTACATAATGCCCTTGTGATTTTGTGGTCATGCCTTGCCTTAGAAAACAAAGGATTAGTTGTCCATTATTTCATTACTCAAATACACTTACTGCTACTGCCTGCAGATTAAGTGGTTGTCTCTTTATTGGAATTTGCATGTAACCCACAGTTTGGTTGGGTTCTCTTGCTTGAATTAAAATCCCCTACCAGGATTTAGATGATATCCTCTGGGCAAAGATATTCACTAAATGTTATGAAAAGAAGCAAAAGAGAATTGTCTCAAGTTAAATGTTCCTCTATTTTTATcatcacatttttaaaagaaattggTTAAAAGGGAAAGGGAGAGTCACATTaatgaaatatgaaatgaaaatgttccgcaaaaatcagaaaaataaattacagtCAGTACGTCTGACTTGTTCTGAAGTAGTTCATAGATTTAAAGAGCACAGTGAGTGTAGGCAGCAAAGTTTTTTACACACATGAAAATATCGACTGTGGTTGAAAGCTGTTGGGACTTTTACCTTTTGAAAAGCATGTGCATTAAATCTAGTTCTCAGGTGCAGAACAGACAGGTTATTGATATTTTTGCCAATAAACAAAACGTGGGAGTTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799408.1 False 2601 mRNA 0.52 4 12381032 12386273
XM_039799409.1 True 2709 mRNA 0.52 5 12381035 12386273

Neighbor

gene id symbol gene type direction distance location
rad21l1 NA coding upstream 1335 12368796 ~ 12379697 (+)
opn7d LOC104933009,LOC103354604 coding upstream 17128 12351633 ~ 12363904 (+)
emilin3a NA coding upstream 33784 12343319 ~ 12347248 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding upstream 137231 12241046 ~ 12243801 (+)
LOC120558724 NA coding upstream 239230 12129836 ~ 12141802 (+)
pqbp1 pqbp1 coding downstream 113096 12499369 ~ 12504342 (+)
LOC120558783 LOC103354697 coding downstream 126981 12513254 ~ 12556372 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding downstream 175538 12561811 ~ 12587368 (+)
kdm5c kdm5c coding downstream 204634 12590907 ~ 12611168 (+)
LOC120559891 NA coding downstream 260263 12646536 ~ 12650775 (+)
G49157 NA non-coding upstream 16591 12364093 ~ 12364441 (+)
G49106 NA non-coding upstream 157978 12220013 ~ 12223054 (+)
G49105 NA non-coding upstream 168517 12211744 ~ 12212515 (+)
G49094 NA non-coding upstream 234506 12146204 ~ 12146526 (+)
G49086 NA non-coding upstream 238505 12142142 ~ 12142527 (+)
G49221 NA non-coding downstream 84177 12470450 ~ 12472272 (+)
G49223 NA non-coding downstream 87814 12474087 ~ 12476025 (+)
G49230 NA non-coding downstream 123769 12510042 ~ 12511578 (+)
G49241 LOC101072313 non-coding downstream 274154 12660427 ~ 12661371 (+)
G49301 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 non-coding downstream 288069 12674342 ~ 12677678 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 77629 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 126972 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 157394 12223567 ~ 12223638 (+)
nol4la LOC103354513,LOC100696587 other upstream 170623 12182209 ~ 12210409 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other upstream 277133 12092779 ~ 12103899 (+)
G49209 NA other downstream 66262 12452535 ~ 12458439 (+)
LOC120558314 porcn other downstream 266111 12652384 ~ 12658308 (+)
LOC120559236 LOC103354867 other downstream 408670 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 474448 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 1146117 13532390 ~ 13534922 (+)

Expression


Co-expression Network