rad21l1


Basic Information

Item Value
gene id rad21l1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12368796 ~ 12379697 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799410.1
ttttggcgGAAGTCGCAGTTTATCCTCGCGGTGATGTGCACGCTCCAAATgtcaaccatagacagtatataagaagtcAAACCGCGGCACTTTTCAAAGTTAAGGTGACAGCTAGCTTTGGTGTTCCAACATGATGTTCTACACTCAACTCTTCACATCCAAGCGGGGGCCTCTAGCCAAAATCTGGCTAGCAGCGCACTGGGAAAGGAAACTCACAAAGGCCCACGTATTTGAATGTAATTTAGAAACAACAATCAAAGACATCATTTCCCCAAAGATGAAAATTGGTTTGCGGACATCTGGTCATCTGCTCATTGGTGTGGTCAGGATCTACTCCAAGAAAGCGAAGTATCTCCTTGCAGACTGCAATGATGCCCTGGTTAAAATTAAAATGGCATTCAGGCCAGGTCAGACAGATTTGCCCGTAGAGGGGCTCGAGGCAACACTAAAAGCAATTACCTTGATCGAAGATTTCACTGCCTTTGATGCCCAGCTACCAAAACCAAGTAACATAGATGTCGTGGACCACTTTTCACTGAACCAGTGTCGATCAGAGGAAATCACTCTGAAGGAGGATTATGGAAATGGCTTTCTGAACATGGTAGATTTCGCAGATGAGTCCCAGAGCCACCATGGTGGGCTAATGGATATGACATTCCAGAGCCTGACTCAACATGGAGATGCTTTTGGGGATGAGGATAGAGGATTCGACCTACTCGACTTTCTGACAAACCCCACTGATAATGTTGAGTCCACCGACTTCATCCCCGAAGAGCCTCAACATGAAAATCCAGAGATCTCTGCACTCAATCATCAACAAGATGCGGACAAAAAGATGATGGTGACCCCTACACAGAGTGAGACCACCCTGCTCGCTAATGAGGAGGAGGCCTTTGCCCTTGAACCTGTGACCATCACTCCAAATTCagagaaaaagaggggaaaGAGGAAACGCAGGTTGGTTGTGGACCAGTCTAAAGAGCTGACCAATGACTTCATCAGAGAGCAGCTTTCTGACTATTCAGATCTGGTTGCCCCATTGGACATGGCCCCACCAACCTTGCAGCTCATGCAGTGGAAGGAGAGCGGAAGTGCAGACAAACTCTTTACACAGCCGTGTACCACTGTAGCAACTCCACAGATAAAGGAGCTCTTTGCCAAGAGTATTTTCCAGGGGAAGTATTATGGTGCGTGTGAGGAGGTTGAGATGATGCGCCAGGATGGACAAGAAGTTCAGAGGGACATAAGCGCCCTCACCACAGACAGCGTCAGTATCGTAGATTCATCAATAGATCCAGAAAGAACCCACAACACTGAGCTGACAGACCCTGATCACATAAATGACAATCAACGTGGGAATTACTCAGAGCTGGCACAAgatGAAAACGAGTCGGAGTTCACCCATCCAGAACTTCCATCAGAAGACTCCATGTTTGTCCATCCGTCTTGCATACAGCAGGAGACTCAGTCAACTTCCCTCCACACTCAGTCTATGCTCGACAGccaggactttgaggagaggaGGATCAGCAGGCGTACACAGAAGCTTCTGAACACACTAAAAAGCCAGAGCAACAGTGTTACCACGTTTAGCCTGGAGGCACTCTGTGAAGGAAGCACTCGCTTGCAGGCTGCAACCACTTTCTTCTGTCTTCTGGTCCTGAAAAAACAAGAAGCCCTTCATCTGAGCCAGAGAGCACCCTATGAGGACATCCTTCTTACTCCTGGACCGAAGTTCTACAATtagtaaaacagaaaacagtTTCTTTACAAAACAGAGATGCAGTTCTGGTTCTACTCGATCTGCCTCATGCACAAGTGTCACATGTTT
>XM_039799411.1
TTTGGAAATCATGTCACAAATGGTCACAagttgctaacgttagtttacggCTAGAGGTGACCGCAAATATGAGCAAACCGAGGGGAAGCAACGTCACCGGTGACAGCTAGCTTTGGTGTTCCAACATGATGTTCTACACTCAACTCTTCACATCCAAGCGGGGGCCTCTAGCCAAAATCTGGCTAGCAGCGCACTGGGAAAGGAAACTCACAAAGGCCCACGTATTTGAATGTAATTTAGAAACAACAATCAAAGACATCATTTCCCCAAAGATGAAAATTGGTTTGCGGACATCTGGTCATCTGCTCATTGGTGTGGTCAGGATCTACTCCAAGAAAGCGAAGTATCTCCTTGCAGACTGCAATGATGCCCTGGTTAAAATTAAAATGGCATTCAGGCCAGGTCAGACAGATTTGCCCGTAGAGGGGCTCGAGGCAACACTAAAAGCAATTACCTTGATCGAAGATTTCACTGCCTTTGATGCCCAGCTACCAAAACCAAGTAACATAGATGTCGTGGACCACTTTTCACTGAACCAGTGTCGATCAGAGGAAATCACTCTGAAGGAGGATTATGGAAATGGCTTTCTGAACATGGTAGATTTCGCAGATGAGTCCCAGAGCCACCATGGTGGGCTAATGGATATGACATTCCAGAGCCTGACTCAACATGGAGATGCTTTTGGGGATGAGGATAGAGGATTCGACCTACTCGACTTTCTGACAAACCCCACTGATAATGTTGAGTCCACCGACTTCATCCCCGAAGAGCCTCAACATGAAAATCCAGAGATCTCTGCACTCAATCATCAACAAGATGCGGACAAAAAGATGATGGTGACCCCTACACAGAGTGAGACCACCCTGCTCGCTAATGAGGAGGAGGCCTTTGCCCTTGAACCTGTGACCATCACTCCAAATTCagagaaaaagaggggaaaGAGGAAACGCAGGTTGGTTGTGGACCAGTCTAAAGAGCTGACCAATGACTTCATCAGAGAGCAGCTTTCTGACTATTCAGATCTGGTTGCCCCATTGGACATGGCCCCACCAACCTTGCAGCTCATGCAGTGGAAGGAGAGCGGAAGTGCAGACAAACTCTTTACACAGCCGTGTACCACTGTAGCAACTCCACAGATAAAGGAGCTCTTTGCCAAGAGTATTTTCCAGGGGAAGTATTATGGTGCGTGTGAGGAGGTTGAGATGATGCGCCAGGATGGACAAGAAGTTCAGAGGGACATAAGCGCCCTCACCACAGACAGCGTCAGTATCGTAGATTCATCAATAGATCCAGAAAGAACCCACAACACTGAGCTGACAGACCCTGATCACATAAATGACAATCAACGTGGGAATTACTCAGAGCTGGCACAAgatGAAAACGAGTCGGAGTTCACCCATCCAGAACTTCCATCAGAAGACTCCATGTTTGTCCATCCGTCTTGCATACAGCAGGAGACTCAGTCAACTTCCCTCCACACTCAGTCTATGCTCGACAGccaggactttgaggagaggaGGATCAGCAGGCGTACACAGAAGCTTCTGAACACACTAAAAAGCCAGAGCAACAGTGTTACCACGTTTAGCCTGGAGGCACTCTGTGAAGGAAGCACTCGCTTGCAGGCTGCAACCACTTTCTTCTGTCTTCTGGTCCTGAAAAAACAAGAAGCCCTTCATCTGAGCCAGAGAGCACCCTATGAGGACATCCTTCTTACTCCTGGACCGAAGTTCTACAATtagtaaaacagaaaacagtTTCTTTACAAAACAGAGATGCAGTTCTGGTTCTACTCGATCTGCCTCATGCACAAGTGTCACATGTTT
>XM_039799412.1
ttttggcgGAAGTCGCAGTTTATCCTCGCGGTGATGTGCACGCTCCAAATgtcaaccatagacagtatataagaagtcAAACCGCGGCACTTTTCAAAGTTAAGGTGACAGCTAGCTTTGGTGTTCCAACATGATGTTCTACACTCAACTCTTCACATCCAAGCGGGGGCCTCTAGCCAAAATCTGGCTAGCAGCGCACTGGGAAAGGAAACTCACAAAGGCCCACGTATTTGAATGTAATTTAGAAACAACAATCAAAGACATCATTTCCCCAAAGATGAAAATTGGTTTGCGGACATCTGGTCATCTGCTCATTGGTGTGGTCAGGATCTACTCCAAGAAAGCGAAGTATCTCCTTGCAGACTGCAATGATGCCCTGGTTAAAATTAAAATGGCATTCAGGCCAGGTCAGACAGATTTGCCCGTAGAGGGGCTCGAGGCAACACTAAAAGCAATTACCTTGATCGAAGATTTCACTGCCTTTGATGCCCAGCTACCAAAACCAAGTAACATAGATGTCGTGGACCACTTTTCACTGAACCAGTGTCGATCAGAGGAAATCACTCTGAAGGAGGATTATGGAAATGGCTTTCTGAACATGGTAGATTTCGATGAGTCCCAGAGCCACCATGGTGGGCTAATGGATATGACATTCCAGAGCCTGACTCAACATGGAGATGCTTTTGGGGATGAGGATAGAGGATTCGACCTACTCGACTTTCTGACAAACCCCACTGATAATGTTGAGTCCACCGACTTCATCCCCGAAGAGCCTCAACATGAAAATCCAGAGATCTCTGCACTCAATCATCAACAAGATGCGGACAAAAAGATGATGGTGACCCCTACACAGAGTGAGACCACCCTGCTCGCTAATGAGGAGGAGGCCTTTGCCCTTGAACCTGTGACCATCACTCCAAATTCagagaaaaagaggggaaaGAGGAAACGCAGGTTGGTTGTGGACCAGTCTAAAGAGCTGACCAATGACTTCATCAGAGAGCAGCTTTCTGACTATTCAGATCTGGTTGCCCCATTGGACATGGCCCCACCAACCTTGCAGCTCATGCAGTGGAAGGAGAGCGGAAGTGCAGACAAACTCTTTACACAGCCGTGTACCACTGTAGCAACTCCACAGATAAAGGAGCTCTTTGCCAAGAGTATTTTCCAGGGGAAGTATTATGGTGCGTGTGAGGAGGTTGAGATGATGCGCCAGGATGGACAAGAAGTTCAGAGGGACATAAGCGCCCTCACCACAGACAGCGTCAGTATCGTAGATTCATCAATAGATCCAGAAAGAACCCACAACACTGAGCTGACAGACCCTGATCACATAAATGACAATCAACGTGGGAATTACTCAGAGCTGGCACAAgatGAAAACGAGTCGGAGTTCACCCATCCAGAACTTCCATCAGAAGACTCCATGTTTGTCCATCCGTCTTGCATACAGCAGGAGACTCAGTCAACTTCCCTCCACACTCAGTCTATGCTCGACAGccaggactttgaggagaggaGGATCAGCAGGCGTACACAGAAGCTTCTGAACACACTAAAAAGCCAGAGCAACAGTGTTACCACGTTTAGCCTGGAGGCACTCTGTGAAGGAAGCACTCGCTTGCAGGCTGCAACCACTTTCTTCTGTCTTCTGGTCCTGAAAAAACAAGAAGCCCTTCATCTGAGCCAGAGAGCACCCTATGAGGACATCCTTCTTACTCCTGGACCGAAGTTCTACAATtagtaaaacagaaaacagtTTCTTTACAAAACAGAGATGCAGTTCTGGTTCTACTCGATCTGCCTCATGCACAAGTGTCACATGTTT

Function

NR:

description
PREDICTED: double-strand-break repair protein rad21 homolog isoform X2

GO: NA

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799410.1 True 1831 mRNA 0.47 14 12369207 12379697
XM_039799411.1 False 1826 mRNA 0.47 14 12368796 12379697
XM_039799412.1 False 1828 mRNA 0.47 14 12369207 12379697

Neighbor

gene id symbol gene type direction distance location
opn7d LOC104933009,LOC103354604 coding upstream 4892 12351633 ~ 12363904 (+)
emilin3a NA coding upstream 21548 12343319 ~ 12347248 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding upstream 124995 12241046 ~ 12243801 (+)
LOC120558724 NA coding upstream 226994 12129836 ~ 12141802 (+)
rap1aa LOC106952760,LOC107389464,LOC101074250,LOC103139095,LOC100690250,LOC107090729,LOC105935262,LOC102226994 coding upstream 285954 12068413 ~ 12082842 (+)
LOC120558417 NA coding downstream 1335 12381032 ~ 12386273 (+)
pqbp1 pqbp1 coding downstream 119672 12499369 ~ 12504342 (+)
LOC120558783 LOC103354697 coding downstream 133557 12513254 ~ 12556372 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding downstream 182114 12561811 ~ 12587368 (+)
kdm5c kdm5c coding downstream 211210 12590907 ~ 12611168 (+)
G49157 NA non-coding upstream 4355 12364093 ~ 12364441 (+)
G49106 NA non-coding upstream 145742 12220013 ~ 12223054 (+)
G49105 NA non-coding upstream 156281 12211744 ~ 12212515 (+)
G49094 NA non-coding upstream 222270 12146204 ~ 12146526 (+)
G49086 NA non-coding upstream 226269 12142142 ~ 12142527 (+)
G49221 NA non-coding downstream 90753 12470450 ~ 12472272 (+)
G49223 NA non-coding downstream 94390 12474087 ~ 12476025 (+)
G49230 NA non-coding downstream 130345 12510042 ~ 12511578 (+)
G49241 LOC101072313 non-coding downstream 280730 12660427 ~ 12661371 (+)
G49301 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 non-coding downstream 294645 12674342 ~ 12677678 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 65393 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 114736 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 145158 12223567 ~ 12223638 (+)
nol4la LOC103354513,LOC100696587 other upstream 158387 12182209 ~ 12210409 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other upstream 264897 12092779 ~ 12103899 (+)
G49209 NA other downstream 72838 12452535 ~ 12458439 (+)
LOC120558314 porcn other downstream 272687 12652384 ~ 12658308 (+)
LOC120559236 LOC103354867 other downstream 415246 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 481024 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 1152693 13532390 ~ 13534922 (+)

Expression


Co-expression Network