opn7d (LOC104933009,LOC103354604)


Basic Information

Item Value
gene id opn7d
gene name LOC104933009,LOC103354604
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12351633 ~ 12363904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799416.1
gCCTCCTCACTGTCTCCTTGTCGGTGGCTGGCCAAGCTCCTCTCCCTTGTGTCCTGCTCTCCACCTGGCCTCCATGAGTTTAACTGAGGACAAGCCATTCCTCTATGGAAGATGGGAAATGCTTCAGACACATCTGTTGTGTTTAACTCCAGCATCTCCGAGGAGCAGGACATCCTCATGGGTTCACTCTACAGCGTCTTTTGTATACTGTCCCTCATGGGCAACTGCACTCTGCTGCTTGTTGCATATCACAAGCGGTCGACCCTGAAGCCAGCTGAGTTCTTCATCATCAATCTTTCCGTCAGTGACCTTGGGATGACGCTCTCTTTATTCCCACTGGCGATACCATCATCTTTGACACACAGGTGGCTGTTTGGAGAAATCGTCTGTCAGATCTATGCAATGTGCGGAGTACTGTTTGGTCTATGCAGCTTGACCAACCTCACAGCCCTCTCCTTAGTGTGCTGCCTTAAAGTCTGCTTCCCCAGCCATGGTAACAAGTTCTCCTCGTCACACGCCCGCCTCCTGGTCGTCGGAGTGTGGTGTTACGCGTCTGTGTTTGCTGTAGGGCCCTTGGCACAGTGGGGACATTACGGCCCCGAACCTTATggcacagcctgctgcattgactGGCATGCACCCAACCACGAGCTTTCGGCTTTGTCTTACATTGTCTGCCTTTTCGTCTTTTGCTATGCACTGCCCTGCACCATCATCTTCCTCTCCTACACTTTCATTCTGCTGACAGTGCGAGGGTCACGCCAGGCCATCCAGCAGCATGTGTCACAACAGACCAAGACCACCAATGCACACGCTCTCATTGTCAAGCTGTCAGTAGCAGTATGTGTAGGCTTCCTGGGTGCCTGGACTCCATATGCTGCGGTGGCCATGTGGGCTGCTTTTGGAGACGCCACACGGGTTCCTGCTAATGCATTCGCACTCGCCGCCGTGTTGGCCAAGTCTTCCACTATCTACAACCCTATGGTCTACCTGCTGTGCAAGCCAAACTTCCGCGAGTGTCTCTACAGAGACACGTCTATGTTACGACAGAGGATCTACAGGGGAAGCCCCCGGTCCGAACCGAAAGAACGTTTCGGGTTGACCTCGCAGCGCAACACGGACATGAACATCTCCATGCGTTTCTCAAATGGACAGCAGGAGAGCTATGGGGCGTGTCTGCACTGCACTGAGACTGCAGCCCCCTGTCATTTGACCGCACCCCAAAGGACTGCCTGCGTCCTGACAGGTTCCAGCTACACAGAGGTGACAGTTAGCCAGCTCTCTACGAAACCACAGGCTGATTTTCTCTAGTGGTACAACCTCCTTCTTTCATGAAGCAAACAAGACCAGACATAAGCTCACAAAGACAAGAGAGAACACCAGGCAtggacaacaaaacaacaaagggCCTGCACAAGTTATAGTAAGAGTGTGTCGCCAAGACTTGATAGAATAGCAACATCACAGGCTTGCAGGGCAATGGCATCCTTCCTGAAAGTCACTCATGAATGGCCCTTTCATTGTGAAGTTCAAAATTCATTGTGAGATTCAAAATCAGCATTAACTTCATCACTGAAGATTTGCCACAGAAATGTATGCATGTAATGTTTCAATGTCTACATCTGTGTCCGCCTGTTTCCGGTCTCATTCTAATATGCAGTTATTAAACTGGGTTTTGCAGGAGCAGATCCAACTCTTGGTGGCTTCCAGGTTAATTAGGCAAATGTGTGACATTTCAAAGCAGCTCATCATCGTATGCATAATGTCAGGATAAGCCATGTTAAATATCTGGCAGGcgcaacaaaacacaaaaagagatATGTAAAATGAGGATGTAGAAAGAGATGAAGAAATTGTGTATGGTCCTTCCTGTGATAGCAAGACTAACTAACGTTAGTATGTTACCAATTAAGATCAagctctgttttctgtctcaagTGTTGCATGTTTGCTGACACCTGGGTGGGGAAgatgttaaagggatacgcaACCCAAAATGACAGATGCCGTTTTCTGTAGCAGCCAATTCAAGCCTTCAAAGAGGTATTTGATGCCTGTCATTCTCCTACTGTAGACTGCAGGATGAAACAGGCAAAAATGACTTTGCACACTGTAAACCTTAAAACTCTAATTTGGACGCTGACAGAAAGGTCAATTTCACCTCATATGtaagcattcattttgacagatATTATTCAGAATTTTAAATTAGTGACAACCACCCACCCTTTTTTCTTAGAGGATTCCTTAACTCTTGTTGTTGTGGGACACCTCTAATATCCTAATTGACGATTTAAATATTTTCTTAATTATGTTTTTGAATATCACACATTAACAGAGGTGCAAACACAGAAGTGTCTATCATCTCTAACGCATATTATGTATGCCtatttactgtaaaataaataaatgaataagccATCAATTAAAATAAATCTCTTTTGATTTGAATCAATTAATAACCACGTCTGATCGTACACACATCACTTTGCTATATTTAATTCTACTGTCCCTGTACTGTGTTTAATGTCTTTATGTGAGCATATAAAGCGAAGCAAACTGTATGTGTTGATCAAAACCAATTCTTGTGCAGCTTAATTtactaaagaaataaaaacattgaataATC

Function

NR:

description
PREDICTED: opsin-5

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799416.1 True 2629 mRNA 0.45 6 12351633 12363904

Neighbor

gene id symbol gene type direction distance location
emilin3a NA coding upstream 4385 12343319 ~ 12347248 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding upstream 107832 12241046 ~ 12243801 (+)
LOC120558724 NA coding upstream 209831 12129836 ~ 12141802 (+)
rap1aa LOC106952760,LOC107389464,LOC101074250,LOC103139095,LOC100690250,LOC107090729,LOC105935262,LOC102226994 coding upstream 268791 12068413 ~ 12082842 (+)
kdm5bb LOC103354421 coding upstream 288370 12043095 ~ 12063263 (+)
rad21l1 NA coding downstream 4892 12368796 ~ 12379697 (+)
LOC120558417 NA coding downstream 17128 12381032 ~ 12386273 (+)
pqbp1 pqbp1 coding downstream 135465 12499369 ~ 12504342 (+)
LOC120558783 LOC103354697 coding downstream 149350 12513254 ~ 12556372 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding downstream 197907 12561811 ~ 12587368 (+)
G49106 NA non-coding upstream 128579 12220013 ~ 12223054 (+)
G49105 NA non-coding upstream 139118 12211744 ~ 12212515 (+)
G49094 NA non-coding upstream 205107 12146204 ~ 12146526 (+)
G49086 NA non-coding upstream 209106 12142142 ~ 12142527 (+)
G48978 NA non-coding upstream 368898 11953174 ~ 11982735 (+)
G49157 NA non-coding downstream 189 12364093 ~ 12364441 (+)
G49221 NA non-coding downstream 106546 12470450 ~ 12472272 (+)
G49223 NA non-coding downstream 110183 12474087 ~ 12476025 (+)
G49230 NA non-coding downstream 146138 12510042 ~ 12511578 (+)
G49241 LOC101072313 non-coding downstream 296523 12660427 ~ 12661371 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 48230 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 97573 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 127995 12223567 ~ 12223638 (+)
nol4la LOC103354513,LOC100696587 other upstream 141224 12182209 ~ 12210409 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other upstream 247734 12092779 ~ 12103899 (+)
G49209 NA other downstream 88631 12452535 ~ 12458439 (+)
LOC120558314 porcn other downstream 288480 12652384 ~ 12658308 (+)
LOC120559236 LOC103354867 other downstream 431039 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 496817 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 1168486 13532390 ~ 13534922 (+)

Expression


Co-expression Network