ddost (ddost,LOC102799190)


Basic Information

Item Value
gene id ddost
gene name ddost,LOC102799190
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29517679 ~ 29523452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799451.1
CTGACGTCGACTTCTGCAGCAAAATGGCGTCGTTGACAGCAGTCGTGCACACGAACCGGTCCGGTTCTTTATCATCCAAAAAACAGACCGGAATGATGACCCAAAGGAGGTTCAGACTTTTGGACAACAGTGTCCTGTTATTCCTTTCGTTAGCATCCATGTTGCATTGTGCTTTGGCTGACGGCAAAACGCTCGTTCTACTGGACAACCTCAACATCAGAGACACACATTCAATCTTCTTCCGCAGTTTGGCAGATCGTGGCTTTGACATCGCATTCAAGACGGCTGATGatccctctctatctctgatCAAATATGGCCAGTTCCTGTATGACCATTTAATCATCTTCTCACCATCAGTTGAGGACTTTGGaggaaatataaatgtggaGACCATTACATCCTTTATTGATGGTGGAGGCAACGTCCTGGTTGCTGCCAGTTCAGATATTGGTGACCCACTGAGGGAGCTGGGCAGTGAGTGTGGCATCGAGTTTGATGAAGAAAAGACTGCTGTCATTGACCATCACAACTTTGACGTGTCTGACCCTGGAGAGCACACCCTGATTGTTGCTGATCCAGAGAACCTGATGAAAGCGCCAACTATTGTCGGCAAACCCACCAATAAACCTGTTTTATTCAAGGGTGTTGGCATGGTGGCAGACCCAGAGAATCCTCTTGTCCTGGATATTCTCACCGGCTCATCTACTTCCTACTCGTTTTTCCCTGACCGACCCGTCTCTCAGTACCCCCATGCTGTTGGCAAGAACACCCTTCTTATCGCCGGCCTTCAGGCCAGAAACAATGCCCGAGTGGTTTTCAGCGGCTCCCTGGAGTTCTTCAGCGATGCCTTCTTCAACTCCGCTGTGCAGAAGGCCACGCCTGGCTCCCAGAGGTATGAGCAGACGGGGAACATGGAGCTGGCCGAGGCTCTGTCTCGCTGGGTGTTCAAGGAGGCCGGAGTCCTCAGGGTGGGAGCTGTTACCCATCATCCCGTTGGAGAGATCACTCCTCCTGCAGCATACACAATCACTGACCTTGTGGAGTACAGTATTGTCATTGAGATGTTGACCGAGGGTCGCTGGGTTCCGTTCGACGGAGACGATATTCAGCTTGAGTTTGTGAGGATCGATCCCTTTGTCAGGACTTATCTCAAGAAAAAGGGAAATAAATATAGCGTCCAGTTCAAGCTGCCTGATGTGTACGGAGTCTTCCAGTTCAAGGTGGACTACAACCGACTGGGATACACACATCTCTACTCCTCCACCCAGGTATCAGTGCGCCCCCTGCAGCACACTCAGTACGAGCGCTTCATCCCCTCAGCTTTCCCATACTATGCCAGCGTCTTCTCCATGATGGCAGGACTCTTTGTCTTCAGCGTAGTCTTCTTGCAcatgaaagaaaaggagaagtcAGACTAATGCagagtgtgtgaagagttgaaTTTGAATGTCTTTTGATGGCTTGAATCTTCACGCAGGGATTTGGACTGCAGTCCTCCGTAAAAATACAGTTTCTGTTCACTTATTTGGTTACTTAATTAATCCGGGGCTGGAGGCCAAAGGGGGTGACTATAATGCAGTGGTTGgggtttgtctttttttttttttttttttactgaaattaCTCAAAAGCCTGTAAATGTCCTGAAGTCAGTCAGCGTTTGTATAAAGTTACTTTACAGTTGATAAAGATATCTCCTAAGTAAAGCACTTGCCttgaaacataaaataaatcctTATTGAAATTTGACCCACATTTTCTCAATTTAGGAAGGTTTATTGTGGTAACTACATGCACTGATTATGccaactgttaatttgtttttgatAAGTGTTTCCAAAAAAGTTGGAGTCATCTTAAcaataaaatattaacattCCACTCGA

Function

symbol description
ddost Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in axis; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ir. Orthologous to human DDOST (dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit).

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like

GO:

id name namespace
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799451.1 True 1889 mRNA 0.46 11 29517679 29523452

Neighbor

gene id symbol gene type direction distance location
zbtb17 zbtb17 coding upstream 489 29502226 ~ 29517190 (+)
hspb7 hspb7 coding upstream 17218 29496591 ~ 29500461 (+)
fam131c fam131c coding upstream 44375 29460638 ~ 29473304 (+)
epha2b LOC104966854 coding upstream 68732 29425476 ~ 29448947 (+)
spen spen coding upstream 116302 29374974 ~ 29401377 (+)
arhgef19 arhgef19 coding downstream 48555 29572007 ~ 29593052 (+)
mmp23ba mmp23b coding downstream 218106 29741558 ~ 29751592 (+)
LOC120559844 atad3a,LOC103366266,LOC102783555 coding downstream 288711 29812163 ~ 29821637 (+)
otud3 otud3 coding downstream 316752 29840204 ~ 29846246 (+)
trim33 trim33 coding downstream 330518 29853970 ~ 29891523 (+)
G53963 NA non-coding upstream 108566 29408711 ~ 29409113 (+)
G53962 NA non-coding upstream 133488 29383950 ~ 29384191 (+)
G53960 NA non-coding upstream 134548 29382752 ~ 29383131 (+)
G53956 NA non-coding upstream 144190 29372809 ~ 29373489 (+)
G53948 NA non-coding upstream 168570 29348534 ~ 29349109 (+)
G54057 NA non-coding downstream 44723 29568175 ~ 29569618 (+)
G54079 mib2,LOC106936770,LOC103150490,LOC106926266 non-coding downstream 113075 29636527 ~ 29771801 (+)
G54094 LOC104942893 non-coding downstream 179796 29703248 ~ 29707067 (+)
G54101 ubiad1 non-coding downstream 213589 29737041 ~ 29739244 (+)
G54107 LOC102235830,LOC104955916,LOC108233146 non-coding downstream 235592 29759044 ~ 29760415 (+)
nadka nadk other upstream 194437 29296604 ~ 29323242 (+)
LOC120558754 NA other upstream 1101932 28407271 ~ 28415747 (+)
G53775 NA other upstream 1171763 28341922 ~ 28345916 (+)
casp9 LOC104954971 other upstream 1194900 28319637 ~ 28322779 (+)
bsna bsn,LOC102782891,LOC106513106 other upstream 1373878 27954399 ~ 28143801 (+)
plekhm2 plekhm2 other downstream 571 29524023 ~ 29545886 (+)
ano11 ano7l1,LOC102309663,LOC103367289,LOC103384790 other downstream 25292 29548744 ~ 29567773 (+)
G54103 LOC103366252 other downstream 228994 29752446 ~ 29758010 (+)
szrd1 LOC103366254,LOC108233026,LOC106518923,LOC101072016,LOC107390353 other downstream 246400 29769852 ~ 29782937 (+)
agrn agrn other downstream 691158 30214610 ~ 30486565 (+)

Expression


Co-expression Network