nr1d4a (LOC100709437,LOC104956893,LOC101468893,LOC102785086,LOC102309972)


Basic Information

Item Value
gene id nr1d4a
gene name LOC100709437,LOC104956893,LOC101468893,LOC102785086,LOC102309972
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21007551 ~ 21019292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799488.1
CATGCAGAGCGCACATGTAGCGTGGCTTTACTGAACACATACTACGGTCGAATAAGCGCATCAAACTCCCCTGCGCTCCAGATCCCTGCCAATGAAAACGCACATAAgcgtgaaggagagagagaacggACTCCGCGAGATACAGAGTGAGCCAAAtcccacacaaacagacacaaccCAAGTTATGCGAACGAAAGGGCGGTCACATTTCCTACTCACAAGCAAACGTGGTTGATGTGGCTGTTTGTATCAGTGGGTGTGTATGTCAAGTCTGACAGCGTTCACAGATAAGATGACACTTTTTTTCTTGGAATTCATGAGAATCTTTTAATCTCCGCTCGTACAACATCTCACGCGCTCGAGCCGAGGCGCAGTATCCTGAGCACAGAAGGCATTTATATGTAGCCTATCTTTGAGAAGACCGGTCTGTATTAGCTAAAAGAAAGACATCTCTACAATTTACTGGGAAACAACTTTACGCGCACTGGAAACATTTCCATCACTTCTTCCCATTTTTGCGCTCCGTGAGCAGGTGTTTCACgcaaagctgtttttttttttttttgtactttctcCTGTCTTCAAAAGACTTTTGCTCCAGTCTAGTGACATTCACTGACGTCTATCTTCAAGCCTGTTTAAAGTGATCGACATCAGCAAGAGAAATGGATAACAGCCCTGGTGGTGGAGTCATCCTGTATGCAGGGTGCTCTGGCAGCTCCAGTCCCAGCCCCGGCAGCCCTGGCAGCCCCTCCAGTGGGTATCAGACACAGTCACCTTCTTCACATTCCCAGCCCTCATCACCAGAGGAGGGTGCCTTCACAGAGATTGGGACATTGAAATGTAGGGCAGCTGGGTGCACCACATCATCCTCCAAACTGATATTCCAGTTCCCAGAGGTCTACAGTGCACCCCCAGCGGCAGCCACTCCACAGCATACCTATGCACACCCCATTGCAGGAAAAAGGCCATGCGGGTTCACAGGAACTTTCACAAAGACCGGTGGAATGGTCCTGCTTTGCAAAGTCTGTGGGGACATTGCATCTGGTTTCCACTATGGAGTGCATGCATGTGAAGGTTGCAAGGGTTTTTTCCGCCGCAGCATTCAGCAGAACATCAACTACAAGATGTGTGTGAAGAATGAGAACTGTCTAATCATGCGCATGAACCGCAACCGGTGCCAGCACTGCCGCTTCAAGAAATGCCTCTCTGTTGGCATGTCAAGAGATGCTGTGCGTTTTGGCCGCATCCCCAAGAGAGAAAAGCAGCGACTTCTGGATGAGATGCAGAGCTACATGAACAGCCTAAATGAGTCAGCTGCCGTGGACGTGGACTCACCTTCAGCGAGGGACACTCCTAGCACCCCAGAAGATGGCAACTCAAAAGAGGCCATTGGCGCCATCTCCAGAGCCTACCGTGACATCTTCACCAGCAGCAACAGCCAAGGGAGAGCAGCCGAGAGGGCTAAcatcaccaacaacaacaacaacaacaacacatccACCTTTTCTCAGGATGCCAGTTTTACCCAAGTCTCCTCTCTCCCCACCTCCGCCCAAAGTTATCAGTCTTGCCCTGTTGTGGCTGCCACTCTATGCCCAGCTACCCCTAACGACAAACAACCTACGTTTCACAATGTGGACAACAATCATTACACCTACTTAGTGTCAACAAATCAGAATCATGATCAGTCTAACAGTACAACCTCTCAAAGGGGCAGCTCTGCCAATAATAACAGTTTTCGCAATGCAGGAAGTACCCAAAATCAGCCCTCCTGTCCATGGAAATTAGCTTCAGGAGCTAAAGTGCTGGCCTGTCCTCTCAATGCGTGGCCTGTGTCAGGGGCAGAGCGCACGAGTCAGGAGATATGGGAATCCTTCTCGCAGTGTTTCACTCCTGCTGTCAAGGAAGTGGTAGAGTTTGCCAAGGGCATCCCAGGATTTCAAGAGCTTAGCCAACAAGACCAGGTCATGTTGCTCAAATCAGGCACCTTCCAGgtTCTGATGGTGAGGTTCTGCACCTTGTTCAATGCTGAGGAGCGTACAGTGACCTTCCTGAATGGCCAAACTTACCCCCTGTCCACCCTGCAGGCTTTGGGCATGGGCTCTCTGCTGGACGCAATGTTTGAGTTCAGTGAGAAGTTGAGCTCCCTGGGGCTAGAGCCTGATGAAATGGCACTCTTTATGGCTGTGGTTTTGGTCTCTGCAGATGGTTCTGGCATCTCTAACATGCGGGCTGTGGAGCAGCTACAAGAGGGTCTGATCCGTGCCCTACGGTCACTGATTACTCGCCGTCGCCCAGATGACAGCACCCTCTTCCCCAAACTCCTCCTGCGCCTGCCAGACCTGCGCTCCCTCAACAATATGCACTCCGACAAACTGTTGGCCTTTCGCATTGACCCTTGAGCAGGCTGCTTGTTCACGGAGACACAAACTGTTTTACAGAATATACagtccaccacacacacacgtgcactgATTTTATCTATCAAGGACTTCCTTGAAAATTGAGAAACAAGGAATTGGGCAATCTAAGGGATGGTTTTCAAAAGGATAAATGAGGGCAGGTAGCAGACATATATTTGACTCACTATTGATCTTAATGCTATGTTTTgggacaaataaacacataaaccTCAACAACTCTTGAGAGACATTATTCCAGTATTATCATATAGATTTAGTATTACCATTCTGGACAAATCATGTGTGCACTTTCTCATTATATCAAGTGTACTTAAGAATAAAAGCCAGTTCACTTCTGCGTATTCCTTAAGATGTACATTATCGACAGGCCATCACTAATCAACTGTTGACGTTATTACTTAGGGGCCATTATTGGTGATTGACTATGTCAGTATGTGTTCAAGAGAAAGGGAACCTGTATAATAATACATAGCAAAATCTGAAATATTAAGGCAATTGTGTATCACTGTTTCACAAACATACAATCTGCATTAGTACTGGAAAGAGACCAGTATTTTAATGTGTCACTTGTACACAAGAGGATGCATTCTGTCTCACACGATTTTTGACTAATCTTCAAGAAAACATTTGGCACACCTTGGGTTTAAATATGCCAACTTCATAAATCAATGGCATTTTGTattatttcacaaaatattgTGTCTGTGTCACTATATAGTATAACATCGACTGATGGAGGAGCCCCATGCATGTTGGGTTTATtaattactcttttttttttgctgtaaatATTATGTTACCCTATTGTCTGTGTATCAATGGCTGAATTGATGTGATGGATTGGACAGATGAGTTCGGTATAAAGGAAAATGTACTGACCTTGGTGAGGGTTTGGCCATGCCAAGGGGGCTTTGCACAGGAGAATATTTAGTAGGGATTCTCTGATGGCTTCAACACACTTCCTGCTATCAGATTATGTAACCAACCAGCATAATCCCTGAAATCACCAGCACTCACTCCACATGCACCCAGCTTTCTCTGCCCCCAATGTTTGTCATACAAACACAAGAGATATTTTTGGGTGAGAGATCTTATTTGATGGGTCTTCTCACTGTTTGCTTGTTTGATTATTGCTGACTGAGCATCttgtacattttgtaaatatttcttCCTAAATAGAAACGATATAATGATATAAAGTTTGAATTATGTATTA

Function

NR:

description
PREDICTED: nuclear receptor subfamily 1 group D member 1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799488.1 True 3642 mRNA 0.46 8 21007551 21019292

Neighbor

gene id symbol gene type direction distance location
calcoco1a calcoco1 coding upstream 46726 20949302 ~ 20960825 (+)
cbx5 cbx5 coding upstream 248106 20755053 ~ 20759445 (+)
nfe2 nfe2,LOC102789365 coding upstream 256860 20745555 ~ 20750691 (+)
znf740b znf740,LOC100692539,LOC101474992 coding upstream 287094 20713382 ~ 20720457 (+)
csad csad coding upstream 295287 20706757 ~ 20712264 (+)
mfsd5 mfsd5,LOC102784782 coding downstream 1213 21020505 ~ 21023161 (+)
LOC120558837 faim2,LOC102311007,LOC103362048,LOC102784507 coding downstream 5848 21025140 ~ 21031195 (+)
si:dkey-21c19.3 senp1,LOC102196255,LOC102311320 coding downstream 13603 21032895 ~ 21045968 (+)
lrp1ab LOC103362052 coding downstream 52415 21071707 ~ 21166417 (+)
wnt1 wnt1 coding downstream 243756 21263048 ~ 21268246 (+)
LOC120558354 NA non-coding upstream 228152 20772453 ~ 20779399 (+)
G51386 NA non-coding upstream 255206 20751595 ~ 20752345 (+)
LOC120558477 NA non-coding upstream 344998 20661297 ~ 20662553 (+)
G51317 NA non-coding upstream 836432 20157789 ~ 20171119 (+)
G51283 NA non-coding upstream 1011435 19995881 ~ 19996116 (+)
G51625 NA non-coding downstream 201359 21220651 ~ 21222557 (+)
G51685 LOC104932430,LOC103356918,LOC101170587 non-coding downstream 210978 21230270 ~ 21233529 (+)
LOC120559383 LOC106096427,LOC103356912,LOC102781035,LOC101487100 non-coding downstream 258484 21277776 ~ 21288705 (+)
G51735 NA non-coding downstream 345315 21364607 ~ 21365558 (+)
G51736 acvr1b,LOC105897348 non-coding downstream 346329 21365621 ~ 21366055 (+)
LOC120559772 LOC108235180,LOC102301975,LOC103385136,LOC104941571,LOC107390930,LOC103360973,LOC101475964 other upstream 474982 20445971 ~ 20532569 (+)
LOC120558901 LOC104941554,LOC102293999,LOC103360402 other upstream 941816 20063992 ~ 20065735 (+)
zgc:194242 NA other upstream 1007113 19996477 ~ 20000438 (+)
LOC120558920 LOC104941542 other upstream 1238987 19767626 ~ 19768564 (+)
LOC120558947 lrtm1,LOC102799284 other upstream 1543839 19456477 ~ 19463712 (+)
G51716 NA other downstream 270296 21289588 ~ 21290962 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other downstream 341998 21361290 ~ 21364430 (+)
G51804 NA other downstream 539598 21558890 ~ 21559349 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other downstream 697817 21717109 ~ 21720123 (+)
LOC120559721 cacna1s,LOC103368470 other downstream 763925 21783217 ~ 21807914 (+)

Expression


Co-expression Network