LOC120558583


Basic Information

Item Value
gene id LOC120558583
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13237470 ~ 13243293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799628.1
GGAACGTATGAGACATGGctgtgtatgtattttaacagtctatggtgtgaAGTCGTATAACGTTAACCGAAAGTGATTAGCCATTTCGGAGGAATCGGTAGTCATGTGTTAGGTTTAGGGTTACAGCCAGGAAACACTGTAGCTGCTCTCttacccatagacagtatataagagggttagggttagctccTCACTTTATATATCAAGTGTCTTTACCTCGAGCTGCACTTCCGTGTTGTGTGTTATCGGAGATAGCTAAATAACTGGCGATCATAAAGGGTGACATTGTTACTAACGTGTAACCATTAAGATTGAACattggttgtaaaaaaaaaaaaaacgtcaggagcctgggtctgtcccaggcaTGAAGAGGAAAGCTATGGGTGCAGCGTACAGCTCTGGTTCAGCCTCAAGTCGCAATGTGTCTTCAGCTGCGGGACCGTCGGCCTCGCATTCACAGGAACATCTGTTCACTGTTCCTCTGGAGATCCTGGAGGAGATCTTCCTGAATCTTCCTCCCCATCAGGTGGTTAGTAATTGTCGGTTAGTGTGCCATCAGTGGGCAGAAGTGGCTGACAGTGAATCtttgtggagagagagatgtagaAGAGAAGGATATCGCCCCCGCGATGCTTCCAAAATTCCCAAAGACTGGAGGTTGTTTTACTTCTTGTGCAGGAAGAGAAGAAATCTGCTCAAGAATCCAAGAGGAGAACATGGAATGAAGAACTGGCAGATACTAGAGAATGGTGGCGATAATTGGATAGCAGAAGGAGTTATGGTGCCACATCCAAATGAAACGGTCAAGAAAAACTTTGTGACCTCTTACGGAATGTGCAGGAAGTCGCAGCTGATTAATTTGGAGGCAGAAGGTTATAACCCATCGTTCATGGATCACTTCCAACCAGACATCAAAATATCTGATTGGTATGCACCACGATGGGATTGTGGCAGTGAATATGAGATCTGTGTGGAGTTGCTGAATCAAAGAAAGAAGCCTATCCAGAAGTTTGCACCTCAGACTGTTTACTTTGAGCAGTGGAACGATCAGAAATGGAATCAGatgaccTATGTATTCCAGAACTATGGACCAGGAGTGAGATACATCCGTTTTATCCACGGAGGCAAGGacacacagttctgggcaggaTGGTATGGAATTCGTATTACCGACAGCTGCGTTGAGATATGTCCAGCAGGGGACACATAGCTCTAAGGGATTCATGGTAATGCCTGCTTCCTGCCTTTGCCTAAAATTGCGAAATTGCACCTTTTTCCACCAGCTTTTTTCTCCTTATACAATGTGCAGTCATTTTACATGTTGAAGGAACGTGTCTTTGGGTAAAAGACTATACTCCTTTTCAAAACACTCCCAATGCCGCACCTTAAGAAGGAATACATGTAGATTTATAGTAGTAGGTAAGGTTCATGAGTTGAAGTAGAGCAGAACTCAAAATGTGTAACATTTGTCCTAACACAAgtggaattgaaaaaaaaaaaaaaaaaaaaaaaagtcttctaaaTTATGCAAATCttagttaaaaataaaatcactccaAGAGACCATTTGGAATAGTTAACAGAAATATAACTTAAACGTaaatattatcattattaccTTTCATGGCATGTGGATAATACTTTCTAAAATGAGGTTCATGTGTAATTATCATAACAAATGGGAATCCACTCATCCCAAAGAGCCTCATCCACATCTCTCTGCAGTGAGGTTTTGACTTGTTTCAGTATCAAAGAGTCCTTATGGTCCTTGACACCGTAGTGCCGTTTGTTACTTTGAAAACAGCCATATTACAATCAGTTTCAGGTTCACAGAACAGTATGTCATCTTCAGTTATTTAACGTTCCTCATATTGAATGTAAAACACACACTGGGTCTAAATTaaacttttgtgtttttgtatgccAACTAGTCATGGAAATTGTTAGGAAAAGATGCCATACAAAGTATCATGGCAGCTTTGCAGAACAGAATGAACGATCTGGCTCTGATGTTGACGTGACAACACGTGAAGTTGTATGAAGGCATTAGTGGGTGCAGAATGACTGCTGcaatgcaaaaaagaaaaagaagtcaAATAAGTTGATCTCTCAGATCAGAAGGGATTCTGTCTATTATTGTAATACTGCAGCACTATGTTAAACCAGCTTTAATGGAAATACtaatagtcttgcattgctcTGTAATGTGCAAGTTGTGATGCTGAACATTTGTATTGAAAAACTTATCTGTTGAAAATGTATAGTTCATGTAAGTGTACATATGTAAGTTCATAACCTTTATGTAACCATCAAGTCAGACAACATGTAGTATTTGAAGTTAGGTTTATTCATAATACTGGTTTATTGTACTGCTTTATCACAAGCAAGATACACAACAACTTTGATGTCAAATTGAATAAAGACCAAAGAGTCCTTGTTCTCTCAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process

KEGG:

id description
K10100 FBXO6; F-box protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799628.1 True 2449 mRNA 0.40 6 13237470 13243293

Neighbor

gene id symbol gene type direction distance location
dnajc11a dnajc11,LOC104924676,LOC100696684,LOC102780517 coding upstream 2461 13222993 ~ 13235009 (+)
LOC120558505 LOC103354934,LOC104924675 coding upstream 316667 12911776 ~ 12920803 (+)
tnfrsf9a NA coding upstream 340751 12892471 ~ 12896719 (+)
LOC120559133 mxra8 coding upstream 378078 12848812 ~ 12859392 (+)
aurkaip1 aurkaip1,LOC102776880 coding upstream 389495 12845618 ~ 12847975 (+)
LOC120558998 LOC104924681,LOC104961357 coding downstream 12554 13255847 ~ 13259321 (+)
lemd1 NA coding downstream 29273 13272566 ~ 13284251 (+)
pm20d1.2 pm20d1 coding downstream 41088 13284381 ~ 13292312 (+)
slc16a7 LOC104955228,LOC103355059,LOC105928617 coding downstream 205015 13448308 ~ 13451907 (+)
LOC120558357 LOC105928557,LOC103355067,LOC101477339 coding downstream 230973 13474266 ~ 13499442 (+)
G49346 NA non-coding upstream 308999 12928256 ~ 12928471 (+)
G49334 NA non-coding upstream 309290 12921005 ~ 12928180 (+)
G49330 NA non-coding upstream 396905 12828581 ~ 12840565 (+)
G49314 NA non-coding upstream 453682 12780615 ~ 12783788 (+)
LOC120559802 NA non-coding upstream 505053 12726600 ~ 12732417 (+)
G49461 NA non-coding downstream 63547 13306840 ~ 13307572 (+)
G49474 NA non-coding downstream 122438 13365731 ~ 13378409 (+)
G49502 NA non-coding downstream 189306 13432599 ~ 13433217 (+)
G49508 NA non-coding downstream 201846 13445139 ~ 13446735 (+)
G49562 NA non-coding downstream 373584 13616877 ~ 13641874 (+)
LOC120559134 dvl1 other upstream 351246 12860721 ~ 12886224 (+)
LOC120559236 LOC103354867 other upstream 393036 12794943 ~ 12844434 (+)
LOC120558314 porcn other upstream 579162 12652384 ~ 12658308 (+)
G49209 NA other upstream 779031 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 934067 12283427 ~ 12303403 (+)
G49538 lmod3 other downstream 289097 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 415439 13658732 ~ 13724990 (+)
hmga1a hmga1,LOC103355299 other downstream 869722 14113015 ~ 14121022 (+)
uhrf1bp1 uhrf1bp1 other downstream 962304 14205597 ~ 14227888 (+)
G49773 LOC103358639 other downstream 1321574 14564867 ~ 14567456 (+)

Expression


Co-expression Network