LOC120558589 (LOC103356004)


Basic Information

Item Value
gene id LOC120558589
gene name LOC103356004
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1015388 ~ 1045239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799636.1
agagaaaaaaaaggaaaaggttgTTGGGGCTGTCTTCTTGAGTTCCTGTCGACGACTTTCTGAGTGGGAGCAGTCGCTGAAACCAGGAAGATTAATACACGCCGAGTGGAAAGCAACCGAGCCAGTCTGCTGTCCACATTTCACACCAGTTGAGCTTAACTTTGAACCAAAAAAAAGCAGTCCCTGCTGTGTCAAGTCGACGCTGAAATGGACCCCGCCAGTCAAGATATAAACCTGAACTCTCCTAACAAGGGCCTCGTCGTGGATCATTCAGACAGCTTGTCCGACGTGCCGGTTGAGGGGGCTGTGGAGGGGGCGGTGGGTAACGCAGCCAACCCTCTCCCGCCGGGCCTGACCGAGGAAGAGGCTGAGGAGCTCCGCACAGAGCTCACCAAGGTGGAGGAGGAGATCAACACCCTGCGTCAGGTTTTGTCAGCCAAAGAGAGACACGCCACAGAGCTTAAGAGGAAACTTGGCCTCAGCCCGCTCACCGAACTCAAGCAGAACCTCACCAAGAGCTGGCAAGACGTACAGACCTCCAACGCATATCTGTCTGCCTCAGCCACTTTGGATGACATTGCCCGCTCTGAAGCATACAAGAAGACTCAGGAGACTCTTTCCCAGGCGGGACAGAAGACTAGTGCAGCTCTCACTACAGTGGGCACGGTCATCAGCAAGAGACTGGGCGACATGAG
>XM_039799637.1
aagagaaaaaaaaggaaaaggttgTTGGGGCTGTCTTCTTGAGTTCCTGTCGACGACTTTCTGAGTGGGAGCAGTCGCTGAAACCAGGAAGATTAATACACGCCGAGTGGAAAGCAACCGAGCCAGTCTGCTGTCCACATTTCACACCAGTTGAGCTTAACTTTGAACCAAAAAAAAGCAGTCCCTGCTGTGTCAAGTCGACGCTGAAATGGACCCCGCCAGTCAAGATATAAACCTGAACTCTCCTAACAAGGGCCTCGTCGTGGATCATTCAGACAGCTTGTCCGACGTGCCGGTTGAGGGGGCTGTGGAGGGGGCGGTGGGTAACGCAGCCAACCCTCTCCCGCCGGGCCTGACCGAGGAAGAGGCTGAGGAGCTCCGCACAGAGCTCACCAAGGTGGAGGAGGAGATCAACACCCTGCGTCAGGTTTTGTCAGCCAAAGAGAGACACGCCACAGAGCTTAAGAGGAAACTTGGCCTCAGCCCGCTCACCGAACTCAAGCAGAACCTCACCAAGAGCTGGCAAGACGTACAGACCTCCAACGCATACAAGAAGACTCAGGAGACTCTTTCCCAGGCGGGACAGAAGACTAGTGCAGCTCTCACTACAGTGGGCACGGTCATCAGCAAGAGACTGGGCGACATGAG

Function

NR:

description
PREDICTED: tumor protein D54-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799636.1 True 695 mRNA 0.54 5 1015389 1045239
XM_039799637.1 False 648 mRNA 0.54 4 1015388 1045239

Neighbor

gene id symbol gene type direction distance location
trim101 NA coding upstream 4551 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 29117 938976 ~ 986271 (+)
ptk6b NA coding upstream 167766 825255 ~ 847622 (+)
zgc:194282 srms,LOC103385165 coding upstream 194208 782791 ~ 821180 (+)
LOC120558328 nol4l,LOC103385166,LOC103361530 coding upstream 244332 558217 ~ 771056 (+)
adrm1 NA coding downstream 3733 1048972 ~ 1053010 (+)
LOC120558473 LOC103372586 coding downstream 523056 1568295 ~ 1608445 (+)
LOC120559387 NA coding downstream 1368332 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 1503700 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 1600653 2645892 ~ 2647467 (+)
G46156 NA non-coding upstream 53585 920244 ~ 961803 (+)
G46154 NA non-coding upstream 97054 918092 ~ 918334 (+)
G46134 LOC104947167 non-coding upstream 108260 903558 ~ 907128 (+)
G46133 NA non-coding upstream 111918 902816 ~ 903470 (+)
G46132 NA non-coding upstream 112710 902439 ~ 902678 (+)
G46227 NA non-coding downstream 153771 1199010 ~ 1199211 (+)
G46249 NA non-coding downstream 271361 1316600 ~ 1317598 (+)
G46252 NA non-coding downstream 289237 1334476 ~ 1334791 (+)
LOC120558411 NA non-coding downstream 306491 1351730 ~ 1352130 (+)
G46258 NA non-coding downstream 319881 1365120 ~ 1367303 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 115092 793902 ~ 900296 (+)
LOC120559832 rps21 other downstream 191076 1236315 ~ 1247771 (+)
G46238 NA other downstream 232049 1277288 ~ 1284379 (+)
G46305 NA other downstream 477446 1522685 ~ 1523231 (+)
G46328 NA other downstream 590709 1635948 ~ 1638170 (+)
LOC120559409 NA other downstream 1160102 2205341 ~ 2232659 (+)

Expression


Co-expression Network