LOC120558632 (LOC101473708,LOC108431628,LOC107592856)


Basic Information

Item Value
gene id LOC120558632
gene name LOC101473708,LOC108431628,LOC107592856
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4431388 ~ 4587064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799714.1
TGAAAGCAATCCAGAAGCTGCTTTGCTAGGCATAAGGCTAAGTAAAAGACATACAGTACTGCTCTACCTGGCTATCACAAAGCTCTATCATGAGCAGTGTAGTCCAGAACCCCTACATCGGCCGAACGCCAACCACTCGGATGCCCAAGCCTGGGGGCAGTGGAGGGGTGCCACCTGGGAGTCGAGACAGCAGTGGGATATGTCgaagcagcagcatcagcagtggAAATGGCTTGTCTGGAGGCAAGATACTTTCCCTGTCATCCATGAGTGAGAGTGTGCACAGTGGACTGAGCTGTTTCTTGTCAGAGCAAGCACTGGAGCAGGAAGAAAAGCAGCAGCGCAGTAGCCAGTTAGCAGAGTTTCAGCGCCTGAAAGAGGTTCGCGCAGCTGCTCAGCTAAAAAATCTGGAGGATTTCCTTCGGATAAACCATGTTTCACTCAGGGACAGCATATCTTATTCCACTGGCATGATTTACAGAAATCTGGGCAAATCGGGGCTGCGGGTGTCCTGTCTTGGATTAGGCACGTGGGTTACCTTTGGAGGCCAGATAACAAATGAGGTGGCAGAGGAGCTGATGACTTTGGCATATGAGAATGGGATCAATCTGTTCGACACCGCTGAAGTGTATAATGCTGGAAAGGCTGAAGTTGTCCTGGGAAATATCATAAAGAAGAAAGGATGGAGGCGTTCCAGTTTAGTCATCACCACCAAAATCTTCTGGGGCGGAAAagcagAAATGGAAAGAGGATTGTCTCGAAAACATATAATCGAAGGTCTAAGGGCATCACTAGAGAGACTTCAGCTGGAGTACGTAGACGTGGTTTTTGCGAATCGACCAGATCCTAACACACCTATAGAAGAGACGGTGAGGGCAATGACCCATGTGATCAACCAGGGGATGGCCATGTATTGGGGGACATCACGATGGACCTCCATGGAGATCATGGAGGCGTACTCGGTGGCTCGACAGTTCAACCAGATCCCACCAATCTGCGAACAGGCAGAGTACCACATGTTTCAAAGGGAGAAGGTTGAAGTGCAACTCCCTGAACTGTTCCACAAGATAGGCATTGGAGCTATGACATGGTCTCCACTGGCCTGTGGGATCATCTCAGGGAAGTATAACAGTGGGATCCCCTCTTTTTCACGTGCCTCGCTTAAGGGTTATCAGTGGATGAAGGACAAGATCCTGAGTGAGGAGGGGAGCCGTCAGCAGGTGAAGCTAAAAGAGTTGAAGGCAATTGCTGAGCACCTAGGCTGCACTCTGCCCCAACTGGCTATTGCATGGTGCCTGAGGAATGAGGGGGTGAACTCTGTCCTGCTGGGAGCTTCCAGAACTGACCAGCTGATGGAGAATATCGGAGCAATACAGGTCCTTCCGAAGTTATCACTGTCCATTGTATCTGAGGTGGATAACCTCTTGGGAAACAAGCCCTATAGTAAAAAGGACCTCAGATCCTAGAAGCACCAGTGATGAACTGTCATACTATCCTGCCTATAAATGAGAGACAGCATGGGCAATAAAGTAATTTATGAGAGTGTAGCAAACAGTAAataacaagaaaagaaaatgtgccATTACTCATTTTATCACATTAATGCACTGTCACGTATTgccaattaataaaataaacaatatgcaAAACTTATTCTATTAGTTTGAACATCAACTTCaaggaaacaaaaaaatgaatgaagcaCTGTTCTAATAGGCCACTGAAGCACTAAATAAACTAGCTAATCGTTGAGTAAGCTTGGTGTACCAAACCAGGCTTCTTCACTGTCTACACATTGGTGCCTGTAACTTACAAAATTAAACACATATTGCACAAGACCAGTTAACCTACTAATCACAAAACATGATGGCGTAATGTATTAGCCCTTTCAGTGTAATAAACAGGGATATACTGGGATAAAAATTCAGCCCGGGACTTTGGGATGGAGTGGCCTTTCATGAGCGCCTGTGAAGAGCACACATATCTGATGTTGCTAAAGATCTTAAACTCAGGCCAGAGCTCCGTTGCTGTGCTGTCTGCGGATGAGAGAGCCATGCCAGCCTATCTCAAGGCTAAGGGCCATACTATCACCTGTTATAATACGTCCATGACTGTAACTGACATTTAAAATTGAAATATGACCGCCAGTTCAGCCCTGACCCGACCCTGATAATAACAACAGGTTAAACATTGTTAATACTGGTATTTGGATTCAGTTTTAATCCTAATCCTTCTCCAAAAAATGTTATTGGTTTTAATGACAGGCATTTGATCATAGTTGCATTAATGTCCTGTTTTAGTCTGTTAAAGTTAGCCTAACTTTACTAATGcatgtttgatttttttgttaagttGTAAATTTATTAAAATCTTTACTGCAACCTTTGTCAAACA
>XM_039799715.1
TTTTGTTGTACATTTTTGAGATTAATTTTGTTGTAACCTCCTTTTTGTTTGTCCTTTTCAGTGGCTGtaggctggtggtggtgctggTGACGTGGGTGGTGGTGGTCTTCCTTCTCGTGTGCCGTGTTAACTTGGATTTGGTGATCTCACTAAATCTGGGCAAATCGGGGCTGCGGGTGTCCTGTCTTGGATTAGGCACGTGGGTTACCTTTGGAGGCCAGATAACAAATGAGGTGGCAGAGGAGCTGATGACTTTGGCATATGAGAATGGGATCAATCTGTTCGACACCGCTGAAGTGTATAATGCTGGAAAGGCTGAAGTTGTCCTGGGAAATATCATAAAGAAGAAAGGATGGAGGCGTTCCAGTTTAGTCATCACCACCAAAATCTTCTGGGGCGGAAAagcagAAATGGAAAGAGGATTGTCTCGAAAACATATAATCGAAGGTCTAAGGGCATCACTAGAGAGACTTCAGCTGGAGTACGTAGACGTGGTTTTTGCGAATCGACCAGATCCTAACACACCTATAGAAGAGACGGTGAGGGCAATGACCCATGTGATCAACCAGGGGATGGCCATGTATTGGGGGACATCACGATGGACCTCCATGGAGATCATGGAGGCGTACTCGGTGGCTCGACAGTTCAACCAGATCCCACCAATCTGCGAACAGGCAGAGTACCACATGTTTCAAAGGGAGAAGGTTGAAGTGCAACTCCCTGAACTGTTCCACAAGATAGGCATTGGAGCTATGACATGGTCTCCACTGGCCTGTGGGATCATCTCAGGGAAGTATAACAGTGGGATCCCCTCTTTTTCACGTGCCTCGCTTAAGGGTTATCAGTGGATGAAGGACAAGATCCTGAGTGAGGAGGGGAGCCGTCAGCAGGTGAAGCTAAAAGAGTTGAAGGCAATTGCTGAGCACCTAGGCTGCACTCTGCCCCAACTGGCTATTGCATGGTGCCTGAGGAATGAGGGGGTGAACTCTGTCCTGCTGGGAGCTTCCAGAACTGACCAGCTGATGGAGAATATCGGAGCAATACAGGTCCTTCCGAAGTTATCACTGTCCATTGTATCTGAGGTGGATAACCTCTTGGGAAACAAGCCCTATAGTAAAAAGGACCTCAGATCCTAGAAGCACCAGTGATGAACTGTCATACTATCCTGCCTATAAATGAGAGACAGCATGGGCAATAAAGTAATTTATGAGAGTGTAGCAAACAGTAAataacaagaaaagaaaatgtgccATTACTCATTTTATCACATTAATGCACTGTCACGTATTgccaattaataaaataaacaatatgcaAAACTTATTCTATTAGTTTGAACATCAACTTCaaggaaacaaaaaaatgaatgaagcaCTGTTCTAATAGGCCACTGAAGCACTAAATAAACTAGCTAATCGTTGAGTAAGCTTGGTGTACCAAACCAGGCTTCTTCACTGTCTACACATTGGTGCCTGTAACTTACAAAATTAAACACATATTGCACAAGACCAGTTAACCTACTAATCACAAAACATGATGGCGTAATGTATTAGCCCTTTCAGTGTAATAAACAGGGATATACTGGGATAAAAATTCAGCCCGGGACTTTGGGATGGAGTGGCCTTTCATGAGCGCCTGTGAAGAGCACACATATCTGATGTTGCTAAAGATCTTAAACTCAGGCCAGAGCTCCGTTGCTGTGCTGTCTGCGGATGAGAGAGCCATGCCAGCCTATCTCAAGGCTAAGGGCCATACTATCACCTGTTATAATACGTCCATGACTGTAACTGACATTTAAAATTGAAATATGACCGCCAGTTCAGCCCTGACCCGACCCTGATAATAACAACAGGTTAAACATTGTTAATACTGGTATTTGGATTCAGTTTTAATCCTAATCCTTCTCCAAAAAATGTTATTGGTTTTAATGACAGGCATTTGATCATAGTTGCATTAATGTCCTGTTTTAGTCTGTTAAAGTTAGCCTAACTTTACTAATGcatgtttgatttttttgttaagttGTAAATTTATTAAAATCTTTACTGCAACCTTTGTCAAACA

Function

NR:

description
voltage-gated potassium channel subunit beta-2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04883 KCNAB2; potassium voltage-gated channel Shaker-related subfamily A, beta member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799714.1 True 2394 mRNA 0.45 15 4431388 4587064
XM_039799715.1 False 2064 mRNA 0.43 14 4477589 4587064

Neighbor

gene id symbol gene type direction distance location
LOC120559099 NA coding upstream 149862 4266875 ~ 4281526 (+)
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding upstream 172817 4254640 ~ 4258571 (+)
LOC120559787 LOC103357833 coding upstream 251052 4084694 ~ 4180336 (+)
mfn2 mfn2 coding upstream 371675 4030523 ~ 4059713 (+)
LOC120558402 LOC103357835,LOC104954328 coding upstream 416787 4005265 ~ 4014601 (+)
LOC120558307 NA coding downstream 789239 5376303 ~ 5387260 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 1160145 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 1476786 6063850 ~ 6234843 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding downstream 1674959 6262023 ~ 6272680 (+)
rgs19 LOC103373111 coding downstream 1759044 6346108 ~ 6393502 (+)
LOC120558383 NA non-coding upstream 166756 4258819 ~ 4264632 (+)
G47113 NA non-coding upstream 356488 4074028 ~ 4074900 (+)
G47076 NA non-coding upstream 375425 4055674 ~ 4055963 (+)
G47062 NA non-coding upstream 412309 4015192 ~ 4019079 (+)
G47045 NA non-coding upstream 495798 3934329 ~ 3935590 (+)
LOC120558318 NA non-coding downstream 72402 4659466 ~ 4666871 (+)
LOC120559518 NA non-coding downstream 175325 4762389 ~ 4766774 (+)
LOC120559496 NA non-coding downstream 182216 4769280 ~ 4772306 (+)
G47276 NA non-coding downstream 191053 4778117 ~ 4778555 (+)
LOC120559638 NA non-coding downstream 271204 4858268 ~ 4858785 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 565590 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 916630 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 1126751 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 1143299 3146481 ~ 3288089 (+)
G46574 NA other upstream 1660935 2745898 ~ 2770453 (+)
LOC120559501 NA other downstream 185868 4772932 ~ 4775358 (+)
G47444 NA other downstream 1611982 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 2110929 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 3525377 8112441 ~ 8116228 (+)
pkig pkig other downstream 3755686 8342750 ~ 8380578 (+)

Expression


Co-expression Network