LOC120558666 (LOC100692487,LOC102794907,LOC102302796,LOC101487578)


Basic Information

Item Value
gene id LOC120558666
gene name LOC100692487,LOC102794907,LOC102302796,LOC101487578
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7633880 ~ 7650645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799772.1
gattaactGTGAGCGCGCACAGCACGCCCCCGTTTCGTCCATCAATCCGCGGGGAGAGTGAACATGACGGCCCGGTCTGTGCGGTCCCTCTCCGGAGCCCTGAAGCTCGTGTTCAGCAACCGGTTAACCAGGGTTTACAGTGCGGCCGCATGTAATCAGAGACACAAGTCCACTTACACTACCATCCCTCCGCCGGCACTGTACGGAGGCAGACACACCGTGACTCTGATTCCTGGAGATGGCATCGGACCAGAGCTGGCCAAGCACGTGTGTGAACTATTCCGGTTCTGCTGTGTGCCAGTGGACTTTGAGGTTGTCAATGTGGACTCATCTGTGGACTCAGAAGAAGACATCAATAATGCCATCATGGCTATTAGACGCAATGGAGTTGCACTAAAagGTAACATTGAGACCAACCACAACCTGCCCCCCTCCTACAAGTCCAGAAACAACCTGCTCCGcaccacTCTGGATTTGTATGCCAATGTGATGCACTGCCAGTCCCTACCAGGAGTGAGGACACGCCACAGAAACATCGATATCATGATCATCAGGGAGAACACCGAGGGAGAGTACAGCAGCCTGGAGCacgagAATGTACCGGGCGTCGTTGAATGTCTGAAGATCATCACCAAGACCAAATCTCTACGCATCGCTGACTACGCGTTCAGAACGGCGAGGGCCAAAGGACGCGGACGAGTCACGGCTGTACACAAAGCTAACATCATGAAGTTGGGTGACGGCCTCTTCCTGGAGTGCTGTAAGGAGGTTGCCAGCGGTTACCCTGAGATCACCTTCGACAGCATGATTGTGGACAACACCACCATGCAGctggtTTCCAGGCCCCAGCAGTTCGATGTGATGGTCATGCCCAACCTGTACGGCAACGTAGTGAGTAATGTGTGCGCCGGGCTGGTTGGCGGACCGGGTCTGGTGCCTGGAGCCAACTATGGACAGGACTACGCCGTGTTTGAGACGGGCACCAGGAACACCGGGAAGAGCATTGCTAACCAAAACACGGCCAACCCCACGGCCATGCTGCTGGCCTCCTGCCTGCTGCTGGATCACCTGAGGCTCCACGCTTACGCCAGCATGATCCGCAGAGCCATCCTCTCCACGGTCACCGAGACTCGGCTGCACACGGTGGACCTGGGGGGCCAGGGCTCCACCTCTGAAGTGGTCCGCTCCGTCATGAACGCCGTTCAGAGCACCGGGCCCCTGACACTGAGCATCTAGAACAAACATTCATgtgcaaattctctctctctctctctctggcactGCAGAGTGCATATATTACAGTGTGCCTCTCTTCAGTAGTCTTCTATGCaatttcataataataataataacaagagaGTTGTTTGATAGTAATACTGAAATGAAActgta
>XM_039799773.1
gattaactGTGAGCGCGCACAGCACGCCCCCGTTTCGTCCATCAATCCGCGGGGAGAGTGAACATGACGGCCCGGTCTGTGCGGTCCCTCTCCGGAGCCCTGAAGCTCGTGTTCAGCAACCGGTTAACCAGGGTTTACAGTGCGGCCGCATGTAATCAGAGACACAAGTCCACTTACACTCCTCCGCCGGCACTGTACGGAGGCAGACACACCGTGACTCTGATTCCTGGAGATGGCATCGGACCAGAGCTGGCCAAGCACGTGTGTGAACTATTCCGGTTCTGCTGTGTGCCAGTGGACTTTGAGGTTGTCAATGTGGACTCATCTGTGGACTCAGAAGAAGACATCAATAATGCCATCATGGCTATTAGACGCAATGGAGTTGCACTAAAagGTAACATTGAGACCAACCACAACCTGCCCCCCTCCTACAAGTCCAGAAACAACCTGCTCCGcaccacTCTGGATTTGTATGCCAATGTGATGCACTGCCAGTCCCTACCAGGAGTGAGGACACGCCACAGAAACATCGATATCATGATCATCAGGGAGAACACCGAGGGAGAGTACAGCAGCCTGGAGCacgagAATGTACCGGGCGTCGTTGAATGTCTGAAGATCATCACCAAGACCAAATCTCTACGCATCGCTGACTACGCGTTCAGAACGGCGAGGGCCAAAGGACGCGGACGAGTCACGGCTGTACACAAAGCTAACATCATGAAGTTGGGTGACGGCCTCTTCCTGGAGTGCTGTAAGGAGGTTGCCAGCGGTTACCCTGAGATCACCTTCGACAGCATGATTGTGGACAACACCACCATGCAGctggtTTCCAGGCCCCAGCAGTTCGATGTGATGGTCATGCCCAACCTGTACGGCAACGTAGTGAGTAATGTGTGCGCCGGGCTGGTTGGCGGACCGGGTCTGGTGCCTGGAGCCAACTATGGACAGGACTACGCCGTGTTTGAGACGGGCACCAGGAACACCGGGAAGAGCATTGCTAACCAAAACACGGCCAACCCCACGGCCATGCTGCTGGCCTCCTGCCTGCTGCTGGATCACCTGAGGCTCCACGCTTACGCCAGCATGATCCGCAGAGCCATCCTCTCCACGGTCACCGAGACTCGGCTGCACACGGTGGACCTGGGGGGCCAGGGCTCCACCTCTGAAGTGGTCCGCTCCGTCATGAACGCCGTTCAGAGCACCGGGCCCCTGACACTGAGCATCTAGAACAAACATTCATgtgcaaattctctctctctctctctctggcactGCAGAGTGCATATATTACAGTGTGCCTCTCTTCAGTAGTCTTCTATGCaatttcataataataataataacaagagaGTTGTTTGATAGTAATACTGAAATGAAActgta

Function

NR:

description
PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial

GO: NA

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799772.1 True 1392 mRNA 0.54 12 7633880 7650645
XM_039799773.1 False 1386 mRNA 0.54 11 7633880 7650645

Neighbor

gene id symbol gene type direction distance location
LOC120558796 NA coding upstream 354872 7271418 ~ 7279008 (+)
LOC120558794 NA coding upstream 367445 7261702 ~ 7266435 (+)
LOC120558604 NA coding upstream 453683 7172361 ~ 7180197 (+)
LOC120558799 NA coding upstream 484494 7143788 ~ 7149386 (+)
LOC120558603 NA coding upstream 498038 7126624 ~ 7135842 (+)
LOC120558668 LOC101467015,LOC102195234,LOC101063096,LOC101170270 coding downstream 1428 7652073 ~ 7671014 (+)
lima1a NA coding downstream 80170 7730815 ~ 7764951 (+)
LOC120558968 LOC105935211,LOC103363443,LOC101066234,LOC106920718 coding downstream 114955 7765600 ~ 7773185 (+)
igfbp6b LOC103366149,LOC101464910,LOC100708122,LOC104966704 coding downstream 191501 7842146 ~ 7848434 (+)
pip4k2ca pip4k2c,LOC103366150,LOC103385206 coding downstream 205121 7855766 ~ 7876360 (+)
G47798 fam120c non-coding upstream 13791 7617240 ~ 7620089 (+)
G47794 NA non-coding upstream 30326 7603099 ~ 7603554 (+)
G47789 NA non-coding upstream 47923 7584663 ~ 7585957 (+)
G47768 NA non-coding upstream 164809 7468421 ~ 7469071 (+)
G47762 NA non-coding upstream 177141 7456475 ~ 7456739 (+)
G47881 agap2 non-coding downstream 191849 7842494 ~ 7902442 (+)
G47909 NA non-coding downstream 465735 8116380 ~ 8117222 (+)
G48002 NA non-coding downstream 681877 8332522 ~ 8333531 (+)
G48017 NA non-coding downstream 730442 8381087 ~ 8381428 (+)
G48018 NA non-coding downstream 730846 8381491 ~ 8381729 (+)
ccm2l ccm2l,LOC102778549 other upstream 912948 6697993 ~ 6720932 (+)
G47444 NA other upstream 1433286 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 2858522 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 3768082 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 4119122 3448104 ~ 3514758 (+)
G47903 LOC104965021 other downstream 461796 8112441 ~ 8116228 (+)
pkig pkig other downstream 692105 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 827478 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 1003767 8654412 ~ 8662891 (+)
G48077 NA other downstream 1029637 8680282 ~ 8687964 (+)

Expression


Co-expression Network